IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-30937-w.html
   My bibliography  Save this article

Taf2 mediates DNA binding of Taf14

Author

Listed:
  • Brianna J. Klein

    (University of Colorado School of Medicine)

  • Jordan T. Feigerle

    (Stanford University
    Vanderbilt University School of Medicine)

  • Jibo Zhang

    (The University of North Carolina School of Medicine)

  • Christopher C. Ebmeier

    (University of Colorado)

  • Lixin Fan

    (SAXS Core Facility of the National Cancer Institute)

  • Rohit K. Singh

    (University of Colorado School of Medicine)

  • Wesley W. Wang

    (Texas A&M University)

  • Lauren R. Schmitt

    (University of Colorado School of Medicine)

  • Thomas Lee

    (SAXS Core Facility of the National Cancer Institute)

  • Kirk C. Hansen

    (University of Colorado School of Medicine)

  • Wenshe R. Liu

    (Texas A&M University)

  • Yun-Xing Wang

    (National Institutes of Health)

  • Brian D. Strahl

    (The University of North Carolina School of Medicine)

  • P. Anthony Weil

    (Vanderbilt University School of Medicine)

  • Tatiana G. Kutateladze

    (University of Colorado School of Medicine)

Abstract

The assembly and function of the yeast general transcription factor TFIID complex requires specific contacts between its Taf14 and Taf2 subunits, however, the mechanism underlying these contacts remains unclear. Here, we determined the molecular and structural basis by which the YEATS and ET domains of Taf14 bind to the C-terminal tail of Taf2 and identified a unique DNA-binding activity of the linker region connecting the two domains. We show that in the absence of ligands the linker region of Taf14 is occluded by the surrounding domains, and therefore the DNA binding function of Taf14 is autoinhibited. Binding of Taf2 promotes a conformational rearrangement in Taf14, resulting in a release of the linker for the engagement with DNA and the nucleosome. Genetic in vivo data indicate that the association of Taf14 with both Taf2 and DNA is essential for transcriptional regulation. Our findings provide a basis for deciphering the role of individual TFIID subunits in mediating gene transcription.

Suggested Citation

  • Brianna J. Klein & Jordan T. Feigerle & Jibo Zhang & Christopher C. Ebmeier & Lixin Fan & Rohit K. Singh & Wesley W. Wang & Lauren R. Schmitt & Thomas Lee & Kirk C. Hansen & Wenshe R. Liu & Yun-Xing W, 2022. "Taf2 mediates DNA binding of Taf14," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30937-w
    DOI: 10.1038/s41467-022-30937-w
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-30937-w
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-30937-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Ho Sung Rhee & B. Franklin Pugh, 2012. "Erratum: Genome-wide structure and organization of eukaryotic pre-initiation complexes," Nature, Nature, vol. 487(7405), pages 128-128, July.
    2. Jovylyn Gatchalian & Xiaodong Wang & Jinzen Ikebe & Khan L. Cox & Adam H. Tencer & Yi Zhang & Nathaniel L. Burge & Luo Di & Matthew D. Gibson & Catherine A. Musselman & Michael G. Poirier & Hidetoshi , 2017. "Accessibility of the histone H3 tail in the nucleosome for binding of paired readers," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
    3. Ho Sung Rhee & B. Franklin Pugh, 2012. "Genome-wide structure and organization of eukaryotic pre-initiation complexes," Nature, Nature, vol. 483(7389), pages 295-301, March.
    4. Robert K. Louder & Yuan He & José Ramón López-Blanco & Jie Fang & Pablo Chacón & Eva Nogales, 2016. "Correction: Corrigendum: Structure of promoter-bound TFIID and model of human pre-initiation complex assembly," Nature, Nature, vol. 536(7614), pages 112-112, August.
    5. Olga Kolesnikova & Adam Ben-Shem & Jie Luo & Jeff Ranish & Patrick Schultz & Gabor Papai, 2018. "Molecular structure of promoter-bound yeast TFIID," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    6. Robert K. Louder & Yuan He & José Ramón López-Blanco & Jie Fang & Pablo Chacón & Eva Nogales, 2016. "Structure of promoter-bound TFIID and model of human pre-initiation complex assembly," Nature, Nature, vol. 531(7596), pages 604-609, March.
    7. Guochao Chen & Duo Wang & Bin Wu & Fuxiang Yan & Hongjuan Xue & Quanmeng Wang & Shu Quan & Yong Chen, 2020. "Taf14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Minh Chau Nguyen & Hosein Rostamian & Ana Raman & Pengcheng Wei & Dustin C. Becht & Annette H. Erbse & Brianna J. Klein & Tonya M. Gilbert & Gongyi Zhang & M. Andres Blanco & Brian D. Strahl & Sean D., 2024. "Molecular insight into interactions between the Taf14, Yng1 and Sas3 subunits of the NuA3 complex," Nature Communications, Nature, vol. 15(1), pages 1-11, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Helka Göös & Matias Kinnunen & Kari Salokas & Zenglai Tan & Xiaonan Liu & Leena Yadav & Qin Zhang & Gong-Hong Wei & Markku Varjosalo, 2022. "Human transcription factor protein interaction networks," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    2. Vladislav N. Nikolov & Dhara Malavia & Takashi Kubota, 2022. "SWI/SNF and the histone chaperone Rtt106 drive expression of the Pleiotropic Drug Resistance network genes," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    3. Joana Segura & Ofelia Díaz-Ingelmo & Belén Martínez-García & Alba Ayats-Fraile & Christoforos Nikolaou & Joaquim Roca, 2024. "Nucleosomal DNA has topological memory," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    4. Jan Zrimec & Xiaozhi Fu & Azam Sheikh Muhammad & Christos Skrekas & Vykintas Jauniskis & Nora K. Speicher & Christoph S. Börlin & Vilhelm Verendel & Morteza Haghir Chehreghani & Devdatt Dubhashi & Ver, 2022. "Controlling gene expression with deep generative design of regulatory DNA," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    5. Jay C Brown, 2018. "Control of human gene expression: High abundance of divergent transcription in genes containing both INR and BRE elements in the core promoter," PLOS ONE, Public Library of Science, vol. 13(8), pages 1-19, August.
    6. Minh Chau Nguyen & Hosein Rostamian & Ana Raman & Pengcheng Wei & Dustin C. Becht & Annette H. Erbse & Brianna J. Klein & Tonya M. Gilbert & Gongyi Zhang & M. Andres Blanco & Brian D. Strahl & Sean D., 2024. "Molecular insight into interactions between the Taf14, Yng1 and Sas3 subunits of the NuA3 complex," Nature Communications, Nature, vol. 15(1), pages 1-11, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30937-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.