IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-30565-4.html
   My bibliography  Save this article

Exact simulation of pigment-protein complexes unveils vibronic renormalization of electronic parameters in ultrafast spectroscopy

Author

Listed:
  • F. Caycedo-Soler

    (Ulm University)

  • A. Mattioni

    (Ulm University)

  • J. Lim

    (Ulm University)

  • T. Renger

    (Department of Theoretical Biophysics, Johannes Kepler University Linz)

  • S. F. Huelga

    (Ulm University)

  • M. B. Plenio

    (Ulm University)

Abstract

The primary steps of photosynthesis rely on the generation, transport, and trapping of excitons in pigment-protein complexes (PPCs). Generically, PPCs possess highly structured vibrational spectra, combining many discrete intra-pigment modes and a quasi-continuous of protein modes, with vibrational and electronic couplings of comparable strength. The intricacy of the resulting vibronic dynamics poses significant challenges in establishing a quantitative connection between spectroscopic data and underlying microscopic models. Here we show how to address this challenge using numerically exact simulation methods by considering two model systems, namely the water-soluble chlorophyll-binding protein of cauliflower and the special pair of bacterial reaction centers. We demonstrate that the inclusion of the full multi-mode vibronic dynamics in numerical calculations of linear spectra leads to systematic and quantitatively significant corrections to electronic parameter estimation. These multi-mode vibronic effects are shown to be relevant in the longstanding discussion regarding the origin of long-lived oscillations in multidimensional nonlinear spectra.

Suggested Citation

  • F. Caycedo-Soler & A. Mattioni & J. Lim & T. Renger & S. F. Huelga & M. B. Plenio, 2022. "Exact simulation of pigment-protein complexes unveils vibronic renormalization of electronic parameters in ultrafast spectroscopy," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30565-4
    DOI: 10.1038/s41467-022-30565-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-30565-4
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-30565-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Gregory S. Engel & Tessa R. Calhoun & Elizabeth L. Read & Tae-Kyu Ahn & Tomáš Mančal & Yuan-Chung Cheng & Robert E. Blankenship & Graham R. Fleming, 2007. "Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems," Nature, Nature, vol. 446(7137), pages 782-786, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Vishal Kumar Jaiswal & Daniel Aranda Ruiz & Vasilis Petropoulos & Piotr Kabaciński & Francesco Montorsi & Lorenzo Uboldi & Simone Ugolini & Shaul Mukamel & Giulio Cerullo & Marco Garavelli & Fabrizio , 2024. "Sub-100-fs energy transfer in coenzyme NADH is a coherent process assisted by a charge-transfer state," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    2. Packer, Mike, 2009. "Algal capture of carbon dioxide; biomass generation as a tool for greenhouse gas mitigation with reference to New Zealand energy strategy and policy," Energy Policy, Elsevier, vol. 37(9), pages 3428-3437, September.
    3. Reda M. El-Shishtawy & Robert Haddon & Saleh Al-Heniti & Bahaaudin Raffah & Sayed Abdel-Khalek & Kamal Berrada & Yas Al-Hadeethi, 2016. "Realistic Quantum Control of Energy Transfer in Photosynthetic Processes," Energies, MDPI, vol. 9(12), pages 1-11, December.
    4. Carsten Lippe & Tanita Klas & Jana Bender & Patrick Mischke & Thomas Niederprüm & Herwig Ott, 2021. "Experimental realization of a 3D random hopping model," Nature Communications, Nature, vol. 12(1), pages 1-7, December.
    5. Di Molfetta, Giuseppe & Brachet, Marc & Debbasch, Fabrice, 2014. "Quantum walks in artificial electric and gravitational fields," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 397(C), pages 157-168.
    6. Gabor Vattay & Stuart Kauffman & Samuli Niiranen, 2014. "Quantum Biology on the Edge of Quantum Chaos," PLOS ONE, Public Library of Science, vol. 9(3), pages 1-6, March.
    7. Shekaari, Ashkan & Jafari, Mahmoud, 2020. "Non-equilibrium thermodynamic properties and internal dynamics of 32-residue beta amyloid fibrils," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 557(C).
    8. Alharbi, Fahhad H. & Kais, Sabre, 2015. "Theoretical limits of photovoltaics efficiency and possible improvements by intuitive approaches learned from photosynthesis and quantum coherence," Renewable and Sustainable Energy Reviews, Elsevier, vol. 43(C), pages 1073-1089.
    9. Vasileios Kapsalis & Grigorios Kyriakopoulos & Miltiadis Zamparas & Athanasios Tolis, 2021. "Investigation of the Photon to Charge Conversion and Its Implication on Photovoltaic Cell Efficient Operation," Energies, MDPI, vol. 14(11), pages 1-16, May.
    10. Arif Ullah & Pavlo O. Dral, 2022. "Predicting the future of excitation energy transfer in light-harvesting complex with artificial intelligence-based quantum dynamics," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
    11. Ruidan Zhu & Wenjun Li & Zhanghe Zhen & Jiading Zou & Guohong Liao & Jiayu Wang & Zhuan Wang & Hailong Chen & Song Qin & Yuxiang Weng, 2024. "Quantum phase synchronization via exciton-vibrational energy dissipation sustains long-lived coherence in photosynthetic antennas," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    12. Qian, Xiaohui & Zeng, Congzhi & Zhou, Nengji, 2021. "Quantum criticality of the Ohmic spin-boson model in a high dense spectrum: Symmetries, quantum fluctuations and correlations," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 580(C).
    13. Longo, Giuseppe & Montévil, Maël, 2013. "Extended criticality, phase spaces and enablement in biology," Chaos, Solitons & Fractals, Elsevier, vol. 55(C), pages 64-79.
    14. Kai Müller & Karl S. Schellhammer & Nico Gräßler & Bipasha Debnath & Fupin Liu & Yulia Krupskaya & Karl Leo & Martin Knupfer & Frank Ortmann, 2023. "Directed exciton transport highways in organic semiconductors," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
    15. Tobias Eul & Eva Prinz & Michael Hartelt & Benjamin Frisch & Martin Aeschlimann & Benjamin Stadtmüller, 2022. "Coherent response of the electronic system driven by non-interfering laser pulses," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
    16. Arnault, Pablo & Debbasch, Fabrice, 2016. "Landau levels for discrete-time quantum walks in artificial magnetic fields," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 443(C), pages 179-191.
    17. Ringsmuth, Andrew K. & Landsberg, Michael J. & Hankamer, Ben, 2016. "Can photosynthesis enable a global transition from fossil fuels to solar fuels, to mitigate climate change and fuel-supply limitations?," Renewable and Sustainable Energy Reviews, Elsevier, vol. 62(C), pages 134-163.
    18. J.-B. Trebbia & Q. Deplano & P. Tamarat & B. Lounis, 2022. "Tailoring the superradiant and subradiant nature of two coherently coupled quantum emitters," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    19. Ryan Puskar & Chloe Truong & Kyle Swain & Saborni Chowdhury & Ka-Yi Chan & Shan Li & Kai-Wen Cheng & Ting Yu Wang & Yu-Ping Poh & Yuval Mazor & Haijun Liu & Tsui-Fen Chou & Brent L. Nannenga & Po-Lin , 2022. "Molecular asymmetry of a photosynthetic supercomplex from green sulfur bacteria," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    20. Shirmovsky, S.Eh. & Shulga, D.V., 2023. "Quantum relaxation processes in microtubule tryptophan system," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 617(C).

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30565-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.