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Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

Author

Listed:
  • Biao-Feng Zhou

    (Chinese Academy of Sciences
    University of the Chinese Academy of Sciences)

  • Shuai Yuan

    (Chinese Academy of Sciences)

  • Andrew A. Crowl

    (Duke University)

  • Yi-Ye Liang

    (Chinese Academy of Sciences)

  • Yong Shi

    (Chinese Academy of Sciences)

  • Xue-Yan Chen

    (Chinese Academy of Sciences)

  • Qing-Qing An

    (Chinese Academy of Sciences)

  • Ming Kang

    (Chinese Academy of Sciences
    Chinese Academy of Sciences)

  • Paul S. Manos

    (Duke University)

  • Baosheng Wang

    (Chinese Academy of Sciences
    Chinese Academy of Sciences)

Abstract

Northern Hemisphere forests changed drastically in the early Eocene with the diversification of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the spread of temperate biomes that became increasingly dominated by oaks and their chestnut relatives. Here we use phylogenomic analyses of nuclear and plastid genomes to investigate the timing and pattern of major macroevolutionary events and ancient genome-wide signatures of hybridization across Fagaceae. Innovation related to seed dispersal is implicated in triggering waves of continental radiations beginning with the rapid diversification of major lineages and resulting in unparalleled transformation of forest dynamics within 15 million years following the K-Pg extinction. We detect introgression at multiple time scales, including ancient events predating the origination of genus-level diversity. As oak lineages moved into newly available temperate habitats in the early Miocene, secondary contact between previously isolated species occurred. This resulted in adaptive introgression, which may have further amplified the diversification of white oaks across Eurasia.

Suggested Citation

  • Biao-Feng Zhou & Shuai Yuan & Andrew A. Crowl & Yi-Ye Liang & Yong Shi & Xue-Yan Chen & Qing-Qing An & Ming Kang & Paul S. Manos & Baosheng Wang, 2022. "Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28917-1
    DOI: 10.1038/s41467-022-28917-1
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