Structural variants involved in high-altitude adaptation detected using single-molecule long-read sequencing
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DOI: 10.1038/s41467-023-44034-z
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- Jayne Y. Hehir-Kwa & Tobias Marschall & Wigard P. Kloosterman & Laurent C. Francioli & Jasmijn A. Baaijens & Louis J. Dijkstra & Abdel Abdellaoui & Vyacheslav Koval & Djie Tjwan Thung & René Wardenaar, 2016. "A high-quality human reference panel reveals the complexity and distribution of genomic structural variants," Nature Communications, Nature, vol. 7(1), pages 1-10, December.
- Pei-Kuan Cong & Wei-Yang Bai & Jin-Chen Li & Meng-Yuan Yang & Saber Khederzadeh & Si-Rui Gai & Nan Li & Yu-Heng Liu & Shi-Hui Yu & Wei-Wei Zhao & Jun-Quan Liu & Yi Sun & Xiao-Wei Zhu & Pian-Pian Zhao , 2022. "Genomic analyses of 10,376 individuals in the Westlake BioBank for Chinese (WBBC) pilot project," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Ding Ding & Guangjian Liu & Li Hou & Wanying Gui & Bing Chen & Le Kang, 2018. "Genetic variation in PTPN1 contributes to metabolic adaptation to high-altitude hypoxia in Tibetan migratory locusts," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
- Emilia Huerta-Sánchez & Xin Jin & Asan & Zhuoma Bianba & Benjamin M. Peter & Nicolas Vinckenbosch & Yu Liang & Xin Yi & Mingze He & Mehmet Somel & Peixiang Ni & Bo Wang & Xiaohua Ou & Huasang & Jiangb, 2014. "Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA," Nature, Nature, vol. 512(7513), pages 194-197, August.
- Ryan L. Collins & Harrison Brand & Konrad J. Karczewski & Xuefang Zhao & Jessica Alföldi & Laurent C. Francioli & Amit V. Khera & Chelsea Lowther & Laura D. Gauthier & Harold Wang & Nicholas A. Watts , 2020. "A structural variation reference for medical and population genetics," Nature, Nature, vol. 581(7809), pages 444-451, May.
- Carles A. Boix & Benjamin T. James & Yongjin P. Park & Wouter Meuleman & Manolis Kellis, 2021. "Regulatory genomic circuitry of human disease loci by integrative epigenomics," Nature, Nature, vol. 590(7845), pages 300-307, February.
- Zhikun Wu & Zehang Jiang & Tong Li & Chuanbo Xie & Liansheng Zhao & Jiaqi Yang & Shuai Ouyang & Yizhi Liu & Tao Li & Zhi Xie, 2021. "Structural variants in the Chinese population and their impact on phenotypes, diseases and population adaptation," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
- Fahu Chen & Frido Welker & Chuan-Chou Shen & Shara E. Bailey & Inga Bergmann & Simon Davis & Huan Xia & Hui Wang & Roman Fischer & Sarah E. Freidline & Tsai-Luen Yu & Matthew M. Skinner & Stefanie Ste, 2019. "A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau," Nature, Nature, vol. 569(7756), pages 409-412, May.
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