Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture
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DOI: 10.1038/s41467-021-26805-8
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- Yilong Li & Claire Schwab & Sarra L. Ryan & Elli Papaemmanuil & Hazel M. Robinson & Patricia Jacobs & Anthony V. Moorman & Sara Dyer & Julian Borrow & Mike Griffiths & Nyla A. Heerema & Andrew J. Carr, 2014. "Constitutional and somatic rearrangement of chromosome 21 in acute lymphoblastic leukaemia," Nature, Nature, vol. 508(7494), pages 98-102, April.
- Yilong Li & Nicola D. Roberts & Jeremiah A. Wala & Ofer Shapira & Steven E. Schumacher & Kiran Kumar & Ekta Khurana & Sebastian Waszak & Jan O. Korbel & James E. Haber & Marcin Imielinski & Joachim We, 2020. "Patterns of somatic structural variation in human cancer genomes," Nature, Nature, vol. 578(7793), pages 112-121, February.
- Michael R. Stratton & Peter J. Campbell & P. Andrew Futreal, 2009. "The cancer genome," Nature, Nature, vol. 458(7239), pages 719-724, April.
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