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tclust: An R Package for a Trimming Approach to Cluster Analysis

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  • Fritz, Heinrich
  • García-Escudero, Luis A.
  • Mayo-Iscar, Agustín

Abstract

Outlying data can heavily influence standard clustering methods. At the same time, clustering principles can be useful when robustifying statistical procedures. These two reasons motivate the development of feasible robust model-based clustering approaches. With this in mind, an R package for performing non-hierarchical robust clustering, called tclust, is presented here. Instead of trying to “fit” noisy data, a proportion α of the most outlying observations is trimmed. The tclust package efficiently handles different cluster scatter constraints. Graphical exploratory tools are also provided to help the user make sensible choices for the trimming proportion as well as the number of clusters to search for.

Suggested Citation

  • Fritz, Heinrich & García-Escudero, Luis A. & Mayo-Iscar, Agustín, 2012. "tclust: An R Package for a Trimming Approach to Cluster Analysis," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 47(i12).
    • Handle: RePEc:jss:jstsof:v:047:i12
    DOI: http://hdl.handle.net/10.18637/jss.v047.i12
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    References listed on IDEAS

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    1. Van Aelst, Stefan & (Steven) Wang, Xiaogang & Zamar, Ruben H. & Zhu, Rong, 2006. "Linear grouping using orthogonal regression," Computational Statistics & Data Analysis, Elsevier, vol. 50(5), pages 1287-1312, March.
    2. María Gallegos & Gunter Ritter, 2009. "Trimming algorithms for clustering contaminated grouped data and their robustness," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 3(2), pages 135-167, September.
    3. Leisch, Friedrich, 2004. "FlexMix: A General Framework for Finite Mixture Models and Latent Class Regression in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 11(i08).
    4. Gallegos, María Teresa & Ritter, Gunter, 2010. "Using combinatorial optimization in model-based trimmed clustering with cardinality constraints," Computational Statistics & Data Analysis, Elsevier, vol. 54(3), pages 637-654, March.
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    6. Hardin, Johanna & Rocke, David M., 2004. "Outlier detection in the multiple cluster setting using the minimum covariance determinant estimator," Computational Statistics & Data Analysis, Elsevier, vol. 44(4), pages 625-638, January.
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    Cited by:

    1. Browne, Ryan P., 2022. "Revitalizing the multivariate elliptical leptokurtic-normal distribution and its application in model-based clustering," Statistics & Probability Letters, Elsevier, vol. 190(C).
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    3. Ana Helena Tavares & Jakob Raymaekers & Peter J. Rousseeuw & Paula Brito & Vera Afreixo, 2020. "Clustering genomic words in human DNA using peaks and trends of distributions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 14(1), pages 57-76, March.
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    5. Sugasawa, Shonosuke & Kobayashi, Genya, 2022. "Robust fitting of mixture models using weighted complete estimating equations," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
    6. Fritz, Heinrich & García-Escudero, Luis A. & Mayo-Iscar, Agustín, 2013. "A fast algorithm for robust constrained clustering," Computational Statistics & Data Analysis, Elsevier, vol. 61(C), pages 124-136.

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