Bio-Constrained Codes with Neural Network for Density-Based DNA Data Storage
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- Qian Liu & Li Fang & Guoliang Yu & Depeng Wang & Chuan-Le Xiao & Kai Wang, 2019. "Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Jin, Xin & Nie, Rencan & Zhou, Dongming & Yao, Shaowen & Chen, Yanyan & Yu, Jiefu & Wang, Quan, 2016. "A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 461(C), pages 325-338.
- Nick Goldman & Paul Bertone & Siyuan Chen & Christophe Dessimoz & Emily M. LeProust & Botond Sipos & Ewan Birney, 2013. "Towards practical, high-capacity, low-maintenance information storage in synthesized DNA," Nature, Nature, vol. 494(7435), pages 77-80, February.
- Jinny X. Zhang & Boyan Yordanov & Alexander Gaunt & Michael X. Wang & Peng Dai & Yuan-Jyue Chen & Kerou Zhang & John Z. Fang & Neil Dalchau & Jiaming Li & Andrew Phillips & David Yu Zhang, 2021. "A deep learning model for predicting next-generation sequencing depth from DNA sequence," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
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Keywords
DNA data storage; bio-constrained codes; neural network; DNA computing;All these keywords.
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