IDEAS home Printed from https://ideas.repec.org/a/gam/jeners/v14y2021i5p1414-d510331.html
   My bibliography  Save this article

The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy

Author

Listed:
  • Paraskevi N. Polymenakou

    (Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Gournes Pediados, P.O. Box 2214, GR 71003 Heraklion, Greece)

  • Paraskevi Nomikou

    (Faculty of Geology and Geoenvironment, National and Kapodistrian University of Athens, Panepistimioupoli Zografou, 15784 Athens, Greece)

  • Haris Zafeiropoulos

    (Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Gournes Pediados, P.O. Box 2214, GR 71003 Heraklion, Greece
    Department of Biology, University of Crete, GR 71500 Crete, Greece)

  • Manolis Mandalakis

    (Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Gournes Pediados, P.O. Box 2214, GR 71003 Heraklion, Greece)

  • Thekla I. Anastasiou

    (Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Gournes Pediados, P.O. Box 2214, GR 71003 Heraklion, Greece)

  • Stephanos Kilias

    (Faculty of Geology and Geoenvironment, National and Kapodistrian University of Athens, Panepistimioupoli Zografou, 15784 Athens, Greece)

  • Nikos C. Kyrpides

    (Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA)

  • Georgios Kotoulas

    (Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Gournes Pediados, P.O. Box 2214, GR 71003 Heraklion, Greece)

  • Antoniοs Magoulas

    (Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Gournes Pediados, P.O. Box 2214, GR 71003 Heraklion, Greece)

Abstract

Marine microbial communities are an untapped reservoir of genetic and metabolic diversity and a valuable source for the discovery of new natural products of biotechnological interest. The newly discovered hydrothermal vent field of Santorini volcanic complex located in the Aegean Sea is gaining increasing interest for potential biotechnological exploitation. The conditions in these environments, i.e., high temperatures, low pH values and high concentration of heavy metals, often resemble harsh industrial settings. Thus, these environments may serve as pools of enzymes of enhanced catalytic properties that may provide benefits to biotechnology. Here, we screened 11 metagenomic libraries previously constructed from microbial mat samples covering the seafloor and the polymetallic chimneys of Kolumbo volcano as well as mat samples from Santorini caldera, to mine, in silico, genes associated with bioenergy applications. We particularly focused on genes encoding biomass hydrolysis enzymes such as cellulases, hemicellulases and lignin-degrading enzymes. A total of 10,417 genes were found for three specific groups of enzymes—i.e., the endoglucanases, the three different beta-glucosidases BGL, bglX and bglB, and the alpha-galactosidases melA, and rafA. Overall, we concluded that the Santorini–Kolumbo volcanic ecosystems constitute a significant resource of novel genes with potential applications in bioenergy that deserve further investigation.

Suggested Citation

  • Paraskevi N. Polymenakou & Paraskevi Nomikou & Haris Zafeiropoulos & Manolis Mandalakis & Thekla I. Anastasiou & Stephanos Kilias & Nikos C. Kyrpides & Georgios Kotoulas & Antoniοs Magoulas, 2021. "The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy," Energies, MDPI, vol. 14(5), pages 1-12, March.
  • Handle: RePEc:gam:jeners:v:14:y:2021:i:5:p:1414-:d:510331
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/1996-1073/14/5/1414/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/1996-1073/14/5/1414/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Henrik Drake & Magnus Ivarsson & Stefan Bengtson & Christine Heim & Sandra Siljeström & Martin J. Whitehouse & Curt Broman & Veneta Belivanova & Mats E. Åström, 2017. "Anaerobic consortia of fungi and sulfate reducing bacteria in deep granite fractures," Nature Communications, Nature, vol. 8(1), pages 1-9, December.
    2. Jason M. Hall-Spencer & Riccardo Rodolfo-Metalpa & Sophie Martin & Emma Ransome & Maoz Fine & Suzanne M. Turner & Sonia J. Rowley & Dario Tedesco & Maria-Cristina Buia, 2008. "Volcanic carbon dioxide vents show ecosystem effects of ocean acidification," Nature, Nature, vol. 454(7200), pages 96-99, July.
    3. Nina Dombrowski & Andreas P. Teske & Brett J. Baker, 2018. "Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
    4. Kiley W. Seitz & Nina Dombrowski & Laura Eme & Anja Spang & Jonathan Lombard & Jessica R. Sieber & Andreas P. Teske & Thijs J. G. Ettema & Brett J. Baker, 2019. "Asgard archaea capable of anaerobic hydrocarbon cycling," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xianzhe Gong & Álvaro Rodríguez Río & Le Xu & Zhiyi Chen & Marguerite V. Langwig & Lei Su & Mingxue Sun & Jaime Huerta-Cepas & Valerie Anda & Brett J. Baker, 2022. "New globally distributed bacterial phyla within the FCB superphylum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    2. Carlos Sanz-Lazaro, 2019. "A Framework to Advance the Understanding of the Ecological Effects of Extreme Climate Events," Sustainability, MDPI, vol. 11(21), pages 1-18, October.
    3. Simone Simeone & Emanuela Molinaroli & Alessandro Conforti & Giovanni Falco, 2018. "Impact of ocean acidification on the carbonate sediment budget of a temperate mixed beach," Climatic Change, Springer, vol. 150(3), pages 227-242, October.
    4. J Timothy Wootton & Catherine A Pfister, 2012. "Carbon System Measurements and Potential Climatic Drivers at a Site of Rapidly Declining Ocean pH," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-11, December.
    5. Campbell, Maria S. & Stehfest, Kilian M. & Votier, Stephen C. & Hall-Spencer, Jason M., 2014. "Mapping fisheries for marine spatial planning: Gear-specific vessel monitoring system (VMS), marine conservation and offshore renewable energy," Marine Policy, Elsevier, vol. 45(C), pages 293-300.
    6. Yan-Ling Qi & Ya-Ting Chen & Yuan-Guo Xie & Yu-Xian Li & Yang-Zhi Rao & Meng-Meng Li & Qi-Jun Xie & Xing-Ru Cao & Lei Chen & Yan-Ni Qu & Zhen-Xuan Yuan & Zhi-Chao Xiao & Lu Lu & Jian-Yu Jiao & Wen-She, 2024. "Analysis of nearly 3000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    7. Edison D. Macusi & Nitcel Aymie Albarido & Misael B. Clapano & Mudjekeewis D. Santos, 2022. "Vulnerability Assessment of Pacific Whiteleg Shrimp ( Penaeus vannamei ) Farms and Vendors in Davao, Philippines Using FishVool," Sustainability, MDPI, vol. 14(8), pages 1-15, April.
    8. Zhiguang Qiu & Li Yuan & Chun-Ang Lian & Bin Lin & Jie Chen & Rong Mu & Xuejiao Qiao & Liyu Zhang & Zheng Xu & Lu Fan & Yunzeng Zhang & Shanquan Wang & Junyi Li & Huiluo Cao & Bing Li & Baowei Chen & , 2024. "BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    9. Ying-Li Zhou & Paraskevi Mara & Guo-Jie Cui & Virginia P. Edgcomb & Yong Wang, 2022. "Microbiomes in the Challenger Deep slope and bottom-axis sediments," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    10. Paula S. M. Celis-Plá & Brezo Martínez & Nathalie Korbee & Jason M. Hall-Spencer & Félix L. Figueroa, 2017. "Ecophysiological responses to elevated CO2 and temperature in Cystoseira tamariscifolia (Phaeophyceae)," Climatic Change, Springer, vol. 142(1), pages 67-81, May.
    11. Luís C. Rodrigues & Jeroen C. J. M. Bergh & Maria L. Loureiro & Paulo A. L. D. Nunes & Sergio Rossi, 2016. "The Cost of Mediterranean Sea Warming and Acidification: A Choice Experiment Among Scuba Divers at Medes Islands, Spain," Environmental & Resource Economics, Springer;European Association of Environmental and Resource Economists, vol. 63(2), pages 289-311, February.
    12. Paraskevi Mara & David Geller-McGrath & Virginia Edgcomb & David Beaudoin & Yuki Morono & Andreas Teske, 2023. "Metagenomic profiles of archaea and bacteria within thermal and geochemical gradients of the Guaymas Basin deep subsurface," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    13. Luis E. Valentin-Alvarado & Kathryn E. Appler & Valerie Anda & Marie C. Schoelmerich & Jacob West-Roberts & Veronika Kivenson & Alexander Crits-Christoph & Lynn Ly & Rohan Sachdeva & Chris Greening & , 2024. "Asgard archaea modulate potential methanogenesis substrates in wetland soil," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    14. Israt Jahan & Dewan Ahsan & Md Hasan Farque, 2017. "Fishers’ local knowledge on impact of climate change and anthropogenic interferences on Hilsa fishery in South Asia: evidence from Bangladesh," Environment, Development and Sustainability: A Multidisciplinary Approach to the Theory and Practice of Sustainable Development, Springer, vol. 19(2), pages 461-478, April.
    15. Leung, Dennis Y.C. & Caramanna, Giorgio & Maroto-Valer, M. Mercedes, 2014. "An overview of current status of carbon dioxide capture and storage technologies," Renewable and Sustainable Energy Reviews, Elsevier, vol. 39(C), pages 426-443.
    16. Nathalie Hilmi & Denis Allemand & Mine Cinar & Sarah Cooley & Jason Hall-Spencer & Gunnar Haraldsson & Caroline Hattam & Ross Jeffree & James Orr & Katrin Rehdanz & Stéphanie Reynaud & Alain Safa & Sa, 2014. "Exposure of Mediterranean countries to ocean acidification," Post-Print hal-03211779, HAL.
    17. Punt, André E. & Poljak, Dusanka & Dalton, Michael G. & Foy, Robert J., 2014. "Evaluating the impact of ocean acidification on fishery yields and profits: The example of red king crab in Bristol Bay," Ecological Modelling, Elsevier, vol. 285(C), pages 39-53.
    18. Richards, Russell & Chaloupka, Milani & Sanò, Marcello & Tomlinson, Rodger, 2011. "Modelling the effects of ‘coastal’ acidification on copper speciation," Ecological Modelling, Elsevier, vol. 222(19), pages 3559-3567.
    19. Thanh Viet Nguyen & Tuyen Quang Tran & Dewan Ahsan, 2022. "Aquaculture Farmers' Economic Risks Due to Climate Change: Evidence from Vietnam," European Journal of Business Science and Technology, Mendel University in Brno, Faculty of Business and Economics, vol. 8(1), pages 42-53.
    20. Pringle, Adam M. & Handler, R.M. & Pearce, J.M., 2017. "Aquavoltaics: Synergies for dual use of water area for solar photovoltaic electricity generation and aquaculture," Renewable and Sustainable Energy Reviews, Elsevier, vol. 80(C), pages 572-584.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jeners:v:14:y:2021:i:5:p:1414-:d:510331. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.