IDEAS home Printed from https://ideas.repec.org/a/eee/thpobi/v130y2019icp13-49.html
   My bibliography  Save this article

Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics

Author

Listed:
  • Agarwala, Atish
  • Fisher, Daniel S.

Abstract

The dynamics of evolution is intimately shaped by epistasis — interactions between genetic elements which cause the fitness-effect of combinations of mutations to be non-additive. Analyzing evolutionary dynamics that involves large numbers of epistatic mutations is intrinsically difficult. A crucial feature is that the fitness landscape in the vicinity of the current genome depends on the evolutionary history. A key step is thus developing models that enable study of the effects of past evolution on future evolution. In this work, we introduce a broad class of high-dimensional random fitness landscapes for which the correlations between fitnesses of genomes are a general function of genetic distance. Their Gaussian character allows for tractable computational as well as analytic understanding. We study the properties of these landscapes focusing on the simplest evolutionary process: random adaptive (uphill) walks. Conventional measures of “ruggedness†are shown to not much affect such adaptive walks. Instead, the long-distance statistics of epistasis cause all properties to be highly conditional on past evolution, determining the statistics of the local landscape (the distribution of fitness-effects of available mutations and combinations of these), as well as the global geometry of evolutionary trajectories. In order to further explore the effects of conditioning on past evolution, we model the effects of slowly changing environments. At long times, such fitness “seascapes†cause a statistical steady state with highly intermittent evolutionary dynamics: populations undergo bursts of rapid adaptation, interspersed with periods in which adaptive mutations are rare and the population waits for more new directions to be opened up by changes in the environment. Finally, we discuss prospects for studying more complex evolutionary dynamics and on broader classes of high-dimensional landscapes and seascapes.

Suggested Citation

  • Agarwala, Atish & Fisher, Daniel S., 2019. "Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics," Theoretical Population Biology, Elsevier, vol. 130(C), pages 13-49.
  • Handle: RePEc:eee:thpobi:v:130:y:2019:i:c:p:13-49
    DOI: 10.1016/j.tpb.2019.09.011
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0040580919301765
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.tpb.2019.09.011?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Weissman, Daniel B. & Desai, Michael M. & Fisher, Daniel S. & Feldman, Marcus W., 2009. "The rate at which asexual populations cross fitness valleys," Theoretical Population Biology, Elsevier, vol. 75(4), pages 286-300.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Osmond, Matthew M. & Otto, Sarah P., 2015. "Fitness-valley crossing with generalized parent–offspring transmission," Theoretical Population Biology, Elsevier, vol. 105(C), pages 1-16.
    2. Anne-Florence Bitbol & David J Schwab, 2014. "Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes," PLOS Computational Biology, Public Library of Science, vol. 10(8), pages 1-15, August.
    3. Serhii Aif & Nico Appold & Lucas Kampman & Oskar Hallatschek & Jona Kayser, 2022. "Evolutionary rescue of resistant mutants is governed by a balance between radial expansion and selection in compact populations," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    4. Michael D Nicholson & Tibor Antal, 2019. "Competing evolutionary paths in growing populations with applications to multidrug resistance," PLOS Computational Biology, Public Library of Science, vol. 15(4), pages 1-25, April.
    5. Daniel Nichol & Peter Jeavons & Alexander G Fletcher & Robert A Bonomo & Philip K Maini & Jerome L Paul & Robert A Gatenby & Alexander RA Anderson & Jacob G Scott, 2015. "Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance," PLOS Computational Biology, Public Library of Science, vol. 11(9), pages 1-19, September.
    6. Proulx, Stephen R., 2011. "The rate of multi-step evolution in Moran and Wright–Fisher populations," Theoretical Population Biology, Elsevier, vol. 80(3), pages 197-207.
    7. Rendel, Mark D., 2011. "Adaptive evolutionary walks require neutral intermediates in RNA fitness landscapes," Theoretical Population Biology, Elsevier, vol. 79(1), pages 12-18.
    8. Santiago, Enrique, 2015. "Probability and time to fixation of an evolving sequence," Theoretical Population Biology, Elsevier, vol. 104(C), pages 78-85.
    9. Van Cleve, Jeremy & Lehmann, Laurent, 2013. "Stochastic stability and the evolution of coordination in spatially structured populations," Theoretical Population Biology, Elsevier, vol. 89(C), pages 75-87.

    More about this item

    Keywords

    Epistasis; Evolutionary theory;

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:thpobi:v:130:y:2019:i:c:p:13-49. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: https://www.journals.elsevier.com/intelligence .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.