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Robust sparse precision matrix estimation for high-dimensional compositional data

Author

Listed:
  • Liang, Wanfeng
  • Wu, Yue
  • Ma, Xiaoyan

Abstract

Motivated by the rapid development in the high-dimensional compositional data analysis, an ”Approximate-Plug” framework with theoretical justifications is proposed to provide robust precision matrix estimation for this kind of data under the sparsity assumption. To be specific, we first construct a Huber-robustness estimator Γ̃ to approximate the centered log-ratio covariance matrix. Then we plug Γ̃ into a constrained ℓ1-minimization procedure to obtain the final estimator Ω̃. Through imposing some mild conditions, we derive the convergence rate under the entrywise maximum norm and the spectral norm. Given that SpiecEasi in Kurtz et al. (2015) shares same routine with us but lacks of robustness and theoretical guarantees, simulation studies are conducted to show the privileges of our procedure. We also apply the proposed method on a real data.

Suggested Citation

  • Liang, Wanfeng & Wu, Yue & Ma, Xiaoyan, 2022. "Robust sparse precision matrix estimation for high-dimensional compositional data," Statistics & Probability Letters, Elsevier, vol. 184(C).
  • Handle: RePEc:eee:stapro:v:184:y:2022:i:c:s0167715222000098
    DOI: 10.1016/j.spl.2022.109379
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    References listed on IDEAS

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    1. Banerjee, Sayantan & Ghosal, Subhashis, 2015. "Bayesian structure learning in graphical models," Journal of Multivariate Analysis, Elsevier, vol. 136(C), pages 147-162.
    2. Wang, Luheng & Chen, Zhao & Wang, Christina Dan & Li, Runze, 2020. "Ultrahigh dimensional precision matrix estimation via refitted cross validation," Journal of Econometrics, Elsevier, vol. 215(1), pages 118-130.
    3. Lam, Clifford & Fan, Jianqing, 2009. "Sparsistency and rates of convergence in large covariance matrix estimation," LSE Research Online Documents on Economics 31540, London School of Economics and Political Science, LSE Library.
    4. Yuanpei Cao & Wei Lin & Hongzhe Li, 2019. "Large Covariance Estimation for Compositional Data Via Composition-Adjusted Thresholding," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 114(526), pages 759-772, April.
    5. Zachary D Kurtz & Christian L Müller & Emily R Miraldi & Dan R Littman & Martin J Blaser & Richard A Bonneau, 2015. "Sparse and Compositionally Robust Inference of Microbial Ecological Networks," PLOS Computational Biology, Public Library of Science, vol. 11(5), pages 1-25, May.
    6. Jianhua Z. Huang & Naiping Liu & Mohsen Pourahmadi & Linxu Liu, 2006. "Covariance matrix selection and estimation via penalised normal likelihood," Biometrika, Biometrika Trust, vol. 93(1), pages 85-98, March.
    7. J. L. Scealy & Patrice de Caritat & Eric C. Grunsky & Michail T. Tsagris & A. H. Welsh, 2015. "Robust Principal Component Analysis for Power Transformed Compositional Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(509), pages 136-148, March.
    8. Marco Avella-Medina & Heather S Battey & Jianqing Fan & Quefeng Li, 2018. "Robust estimation of high-dimensional covariance and precision matrices," Biometrika, Biometrika Trust, vol. 105(2), pages 271-284.
    9. Adam J. Rothman & Elizaveta Levina & Ji Zhu, 2010. "A new approach to Cholesky-based covariance regularization in high dimensions," Biometrika, Biometrika Trust, vol. 97(3), pages 539-550.
    10. Qiang Sun & Wen-Xin Zhou & Jianqing Fan, 2020. "Adaptive Huber Regression," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(529), pages 254-265, January.
    11. Cai, Tony & Liu, Weidong & Luo, Xi, 2011. "A Constrained â„“1 Minimization Approach to Sparse Precision Matrix Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 106(494), pages 594-607.
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