An alternative description of power law correlations in DNA sequences
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DOI: 10.1016/j.physa.2019.123735
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- Th. Oikonomou & A. Provata, 2006. "Non-extensive trends in the size distribution of coding and non-coding DNA sequences in the human genome," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 50(1), pages 259-264, March.
- Oikonomou, Th. & Provata, A. & Tirnakli, U., 2008. "Nonextensive statistical approach to non-coding human DNA," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(11), pages 2653-2659.
- Stanley, H.E. & Buldyrev, S.V. & Goldberger, A.L. & Goldberger, Z.D. & Havlin, S. & Mantegna, R.N. & Ossadnik, S.M. & Peng, C.-K. & Simons, M., 1994. "Statistical mechanics in biology: how ubiquitous are long-range correlations?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 205(1), pages 214-253.
- Moreira, D.A. & Albuquerque, E.L. & da Silva, L.R. & Galvão, D.S., 2008. "Low-temperature specific heat spectra considering nonextensive long-range correlated quasiperiodic DNA molecules," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(22), pages 5477-5482.
- Katsaloulis, P. & Theoharis, T. & Zheng, W.M. & Hao, B.L. & Bountis, A. & Almirantis, Y. & Provata, A., 2006. "Long-range correlations of RNA polymerase II promoter sequences across organisms," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 366(C), pages 308-322.
- Katsaloulis, P & Theoharis, T & Provata, A, 2002. "Statistical distributions of oligonucleotide combinations: applications in human chromosomes 21 and 22," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 316(1), pages 380-396.
- Stanley, H.E & Buldyrev, S.V & Goldberger, A.L & Havlin, S & Peng, C.-K & Simons, M, 1999. "Scaling features of noncoding DNA," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 273(1), pages 1-18.
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Cited by:
- Gao, Shilong & Gao, Nunan & Kan, Bixia & Wang, Huiqi, 2021. "Stochastic resonance in coupled star-networks with power-law heterogeneity," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 580(C).
- de Lima, M.M.F. & Costa, M.O. & Silva, R. & Fulco, U.L. & Oliveira, J.I.N. & Vasconcelos, M.S. & Anselmo, D.H.A.L., 2024. "Viral proteins length distributions: A comparative analysis," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 633(C).
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Keywords
Generalized entropy; Molecular biophysics; Nucleic acids;All these keywords.
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