IDEAS home Printed from https://ideas.repec.org/a/eee/phsmap/v462y2016icp207-216.html
   My bibliography  Save this article

Lattice percolation approach to 3D modeling of tissue aging

Author

Listed:
  • Gorshkov, Vyacheslav
  • Privman, Vladimir
  • Libert, Sergiy

Abstract

We describe a 3D percolation-type approach to modeling of the processes of aging and certain other properties of tissues analyzed as systems consisting of interacting cells. Lattice sites are designated as regular (healthy) cells, senescent cells, or vacancies left by dead (apoptotic) cells. The system is then studied dynamically with the ongoing processes including regular cell dividing to fill vacant sites, healthy cells becoming senescent or dying, and senescent cells dying. Statistical-mechanics description can provide patterns of time dependence and snapshots of morphological system properties. The developed theoretical modeling approach is found not only to corroborate recent experimental findings that inhibition of senescence can lead to extended lifespan, but also to confirm that, unlike 2D, in 3D senescent cells can contribute to tissue’s connectivity/mechanical stability. The latter effect occurs by senescent cells forming the second infinite cluster in the regime when the regular (healthy) cell’s infinite cluster still exists.

Suggested Citation

  • Gorshkov, Vyacheslav & Privman, Vladimir & Libert, Sergiy, 2016. "Lattice percolation approach to 3D modeling of tissue aging," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 462(C), pages 207-216.
  • Handle: RePEc:eee:phsmap:v:462:y:2016:i:c:p:207-216
    DOI: 10.1016/j.physa.2016.05.067
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0378437116302679
    Download Restriction: Full text for ScienceDirect subscribers only. Journal offers the option of making the article available online on Science direct for a fee of $3,000

    File URL: https://libkey.io/10.1016/j.physa.2016.05.067?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Dementsov, Alexander & Privman, Vladimir, 2007. "Percolation modeling of conductance of self-healing composites," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 385(2), pages 543-550.
    2. Darren J. Baker & Tobias Wijshake & Tamar Tchkonia & Nathan K. LeBrasseur & Bennett G. Childs & Bart van de Sluis & James L. Kirkland & Jan M. van Deursen, 2011. "Clearance of p16Ink4a-positive senescent cells delays ageing-associated disorders," Nature, Nature, vol. 479(7372), pages 232-236, November.
    3. S. R. White & N. R. Sottos & P. H. Geubelle & J. S. Moore & M. R. Kessler & S. R. Sriram & E. N. Brown & S. Viswanathan, 2001. "Autonomic healing of polymer composites," Nature, Nature, vol. 409(6822), pages 794-797, February.
    4. Domanskyi, Sergii & Privman, Vladimir, 2014. "Percolation modeling of self-damaging of composite materials," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 405(C), pages 1-9.
    5. Darren J. Baker & Bennett G. Childs & Matej Durik & Melinde E. Wijers & Cynthia J. Sieben & Jian Zhong & Rachel A. Saltness & Karthik B. Jeganathan & Grace Casaclang Verzosa & Abdulmohammad Pezeshki &, 2016. "Naturally occurring p16Ink4a-positive cells shorten healthy lifespan," Nature, Nature, vol. 530(7589), pages 184-189, February.
    6. Philippe Cordier & François Tournilhac & Corinne Soulié-Ziakovic & Ludwik Leibler, 2008. "Self-healing and thermoreversible rubber from supramolecular assembly," Nature, Nature, vol. 451(7181), pages 977-980, February.
    7. Marcus E. Peter, 2011. "Apoptosis meets necrosis," Nature, Nature, vol. 471(7338), pages 310-312, March.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Soltani, Ali & Sadeghnejad, Saeid, 2018. "Scaling and critical behavior of lattice and continuum porous media with different connectivity configurations," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 508(C), pages 376-389.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Ren, Minghui & Zhao, Guangsi & Zhou, Guoqing & Qiu, Xianhao & Xue, Qinghua & Chen, Meiting, 2018. "Using strain dynamics for fracture warning of shaft lining," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 507(C), pages 406-413.
    2. Alexander D. Snyder & Zachary J. Phillips & Jack S. Turicek & Charles E. Diesendruck & Kalyana B. Nakshatrala & Jason F. Patrick, 2022. "Prolonged in situ self-healing in structural composites via thermo-reversible entanglement," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    3. Madison L. Doolittle & Dominik Saul & Japneet Kaur & Jennifer L. Rowsey & Stephanie J. Vos & Kevin D. Pavelko & Joshua N. Farr & David G. Monroe & Sundeep Khosla, 2023. "Multiparametric senescent cell phenotyping reveals targets of senolytic therapy in the aged murine skeleton," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
    4. Yudong Fu & Fan Jiang & Xiao Zhang & Yingyi Pan & Rui Xu & Xiu Liang & Xiaofen Wu & Xingqiang Li & Kaixuan Lin & Ruona Shi & Xiaofei Zhang & Dominique Ferrandon & Jing Liu & Duanqing Pei & Jie Wang & , 2024. "Perturbation of METTL1-mediated tRNA N7- methylguanosine modification induces senescence and aging," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
    5. Xu Zhang & Vesselina M. Pearsall & Chase M. Carver & Elizabeth J. Atkinson & Benjamin D. S. Clarkson & Ethan M. Grund & Michelle Baez-Faria & Kevin D. Pavelko & Jennifer M. Kachergus & Thomas A. White, 2022. "Rejuvenation of the aged brain immune cell landscape in mice through p16-positive senescent cell clearance," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    6. Jie Sun & Ming Wang & Yaqi Zhong & Xuan Ma & Shimin Sun & Chenzhong Xu & Linyuan Peng & Guo Li & Liting Zhang & Zuojun Liu & Ding Ai & Baohua Liu, 2022. "A Glb1-2A-mCherry reporter monitors systemic aging and predicts lifespan in middle-aged mice," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    7. Cox, Lynne S., 2022. "Therapeutic approaches to treat and prevent age-related diseases through understanding the underlying biological drivers of ageing," The Journal of the Economics of Ageing, Elsevier, vol. 23(C).
    8. H R Williams & R S Trask & I P Bond, 2011. "A probabilistic approach for design and certification of self-healing advanced composite structures," Journal of Risk and Reliability, , vol. 225(4), pages 435-449, December.
    9. Sascha Schäuble & Karolin Klement & Shiva Marthandan & Sandra Münch & Ines Heiland & Stefan Schuster & Peter Hemmerich & Stephan Diekmann, 2012. "Quantitative Model of Cell Cycle Arrest and Cellular Senescence in Primary Human Fibroblasts," PLOS ONE, Public Library of Science, vol. 7(8), pages 1-14, August.
    10. Parviz, Hadi & Fakoor, Mahdi, 2020. "Free vibration of a composite plate with spatially varying Gaussian properties under uncertain thermal field using assumed mode method," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 559(C).
    11. He Cao & Panpan Yang & Jia Liu & Yan Shao & Honghao Li & Pinglin Lai & Hong Wang & Anling Liu & Bin Guo & Yujin Tang & Xiaochun Bai & Kai Li, 2023. "MYL3 protects chondrocytes from senescence by inhibiting clathrin-mediated endocytosis and activating of Notch signaling," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    12. Ross J. Hill & Nazareno Bona & Job Smink & Hannah K. Webb & Alastair Crisp & Juan I. Garaycoechea & Gerry P. Crossan, 2024. "p53 regulates diverse tissue-specific outcomes to endogenous DNA damage in mice," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    13. Jina Yun & Simon Hansen & Otto Morris & David T. Madden & Clare Peters Libeu & Arjun J. Kumar & Cameron Wehrfritz & Aaron H. Nile & Yingnan Zhang & Lijuan Zhou & Yuxin Liang & Zora Modrusan & Michelle, 2023. "Senescent cells perturb intestinal stem cell differentiation through Ptk7 induced noncanonical Wnt and YAP signaling," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    14. Haili Qin & Ping Liu & Chuanrui Chen & Huai-Ping Cong & Shu-Hong Yu, 2021. "A multi-responsive healable supercapacitor," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    15. Young Hwa Kim & Young-Kyoung Lee & Soon Sang Park & So Hyun Park & So Yeong Eom & Young-Sam Lee & Wonhee John Lee & Juhee Jang & Daeha Seo & Hee Young Kang & Jin Cheol Kim & Su Bin Lim & Gyesoon Yoon , 2023. "Mid-old cells are a potential target for anti-aging interventions in the elderly," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    16. Eirini Lionaki & Ilias Gkikas & Ioanna Daskalaki & Maria-Konstantina Ioannidi & Maria I. Klapa & Nektarios Tavernarakis, 2022. "Mitochondrial protein import determines lifespan through metabolic reprogramming and de novo serine biosynthesis," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    17. Ghasan Fahim Huseien & Moncef L. Nehdi & Iman Faridmehr & Sib Krishna Ghoshal & Hussein K. Hamzah & Omrane Benjeddou & Fahed Alrshoudi, 2022. "Smart Bio-Agents-Activated Sustainable Self-Healing Cementitious Materials: An All-Inclusive Overview on Progress, Benefits and Challenges," Sustainability, MDPI, vol. 14(4), pages 1-37, February.
    18. Damien Maggiorani & Oanh Le & Véronique Lisi & Séverine Landais & Gaël Moquin-Beaudry & Vincent Philippe Lavallée & Hélène Decaluwe & Christian Beauséjour, 2024. "Senescence drives immunotherapy resistance by inducing an immunosuppressive tumor microenvironment," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    19. Marieh B. Al-Handawi & Patrick Commins & Ahmed S. Dalaq & Pedro A. Santos-Florez & Srujana Polavaram & Pascal Didier & Durga Prasad Karothu & Qiang Zhu & Mohammed Daqaq & Liang Li & Panče Naumov, 2024. "Ferroelastic ionic organic crystals that self-heal to 95%," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    20. Saikat Mondal & Pratap Tanari & Samrat Roy & Surojit Bhunia & Rituparno Chowdhury & Arun K. Pal & Ayan Datta & Bipul Pal & C. Malla Reddy, 2023. "Autonomous self-healing organic crystals for nonlinear optics," Nature Communications, Nature, vol. 14(1), pages 1-12, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:phsmap:v:462:y:2016:i:c:p:207-216. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/physica-a-statistical-mechpplications/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.