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A genome signature derived from the interplay of word frequencies and symbol correlations

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  • Möller, Simon
  • Hameister, Heike
  • Hütt, Marc-Thorsten

Abstract

Genome signatures are statistical properties of DNA sequences that provide information on the underlying species. It is not understood, how such species-discriminating statistical properties arise from processes of genome evolution and from functional properties of the DNA. Investigating the interplay of different genome signatures can contribute to this understanding. Here we analyze the statistical dependences of two such genome signatures: word frequencies and symbol correlations at short and intermediate distances.

Suggested Citation

  • Möller, Simon & Hameister, Heike & Hütt, Marc-Thorsten, 2014. "A genome signature derived from the interplay of word frequencies and symbol correlations," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 414(C), pages 216-226.
    • Handle: RePEc:eee:phsmap:v:414:y:2014:i:c:p:216-226
    DOI: 10.1016/j.physa.2014.07.048
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    Cited by:

    1. Kosmidis, Kosmas & Hütt, Marc-Thorsten, 2023. "DNA visibility graphs," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 626(C).
    2. Xie, Xian-Hua & Yu, Zu-Guo & Ma, Yuan-Lin & Han, Guo-Sheng & Anh, Vo, 2017. "A novel genome signature based on inter-nucleotide distances profiles for visualization of metagenomic data," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 482(C), pages 87-94.

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