A novel genome signature based on inter-nucleotide distances profiles for visualization of metagenomic data
Author
Abstract
Suggested Citation
DOI: 10.1016/j.physa.2017.04.064
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Frédéric Guyon & Céline Brochier-Armanet & Alain Guénoche, 2009. "Comparison of alignment free string distances for complete genome phylogeny," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 3(2), pages 95-108, September.
- Rachel Mackelprang & Mark P. Waldrop & Kristen M. DeAngelis & Maude M. David & Krystle L. Chavarria & Steven J. Blazewicz & Edward M. Rubin & Janet K. Jansson, 2011. "Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw," Nature, Nature, vol. 480(7377), pages 368-371, December.
- Möller, Simon & Hameister, Heike & Hütt, Marc-Thorsten, 2014. "A genome signature derived from the interplay of word frequencies and symbol correlations," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 414(C), pages 216-226.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Daniel H Huson & Sina Beier & Isabell Flade & Anna Górska & Mohamed El-Hadidi & Suparna Mitra & Hans-Joachim Ruscheweyh & Rewati Tappu, 2016. "MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-12, June.
- Kosmidis, Kosmas & Hütt, Marc-Thorsten, 2023. "DNA visibility graphs," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 626(C).
- M. E. Marushchak & J. Kerttula & K. Diáková & A. Faguet & J. Gil & G. Grosse & C. Knoblauch & N. Lashchinskiy & P. J. Martikainen & A. Morgenstern & M. Nykamb & J. G. Ronkainen & H. M. P. Siljanen & L, 2021. "Thawing Yedoma permafrost is a neglected nitrous oxide source," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Dazhi Jiao & Yuzhen Ye & Haixu Tang, 2013. "Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences," PLOS Computational Biology, Public Library of Science, vol. 9(3), pages 1-11, March.
- Yuan Zhang & Yanni Sun & James R Cole, 2014. "A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data," PLOS Computational Biology, Public Library of Science, vol. 10(8), pages 1-16, August.
- Sofia Rigou & Sébastien Santini & Chantal Abergel & Jean-Michel Claverie & Matthieu Legendre, 2022. "Past and present giant viruses diversity explored through permafrost metagenomics," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Xiaoqian Li & Jianwei Xing & Shouji Pang & Youhai Zhu & Shuai Zhang & Rui Xiao & Cheng Lu, 2022. "Carbon Isotopic Evidence for Gas Hydrate Release and Its Significance on Seasonal Wetland Methane Emission in the Muli Permafrost of the Qinghai-Tibet Plateau," IJERPH, MDPI, vol. 19(4), pages 1-14, February.
- Anzhou Ma & Jiejie Zhang & Guohua Liu & Xuliang Zhuang & Guoqiang Zhuang, 2022. "Cryosphere Microbiome Biobanks for Mountain Glaciers in China," Sustainability, MDPI, vol. 14(5), pages 1-18, March.
More about this item
Keywords
Alignment-free method; Inter-nucleotide distance; Metagenome; Visualization;All these keywords.
Statistics
Access and download statisticsCorrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:phsmap:v:482:y:2017:i:c:p:87-94. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/physica-a-statistical-mechpplications/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.