IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v406y2019icp33-43.html
   My bibliography  Save this article

Persistent problems in the construction of matrix population models

Author

Listed:
  • Kendall, Bruce E.
  • Fujiwara, Masami
  • Diaz-Lopez, Jasmin
  • Schneider, Sandra
  • Voigt, Jakob
  • Wiesner, Sören

Abstract

Matrix population models (MPMs) are powerful tools for translating demographic and life history information into a form that can be used to address a wide range of research topics, such as projecting population dynamics, evaluating stressor impacts on populations, and studying life history evolution. However, the reliability of such studies depends on the MPM being constructed in a way that accurately reflects the species’ life history. We highlight three errors commonly encountered in published MPMs: (1) failing to include survival in the fertility coefficient; (2) introducing a one-year delay in age at first reproduction; and (3) incorrectly calculating the growth rate out of a stage class. We review the sources of such errors and provide new analyses revealing the impact of such errors on model predictions, using lionfish and American alligator models as examples. To quantify the prevalence of such errors we examined and scored the original publications underlying the models in the COMADRE Animal Matrix Database. The first two errors were found in 34% and 62%, respectively, of the published studies; nearly all were in models that used a “postbreeding census” representation of the life cycle (in which newborns—eggs, neonates, fledglings, etc.—are explicitly included). Of the studies where stages may last longer than one time step, 53% constructed the growth rate using inappropriate formulas for estimating the asymptotic population growth rate or its sensitivity to demographic parameters. These results suggest that further efforts may be required to educate biologists on the construction of MPMs, perhaps in concert with the development of new software tools. Furthermore, the conclusions of many studies that are based on MPMs may need to be re-examined, and synthetic studies using the COMADRE Database need to be accompanied by careful examination of the underlying studies.

Suggested Citation

  • Kendall, Bruce E. & Fujiwara, Masami & Diaz-Lopez, Jasmin & Schneider, Sandra & Voigt, Jakob & Wiesner, Sören, 2019. "Persistent problems in the construction of matrix population models," Ecological Modelling, Elsevier, vol. 406(C), pages 33-43.
  • Handle: RePEc:eee:ecomod:v:406:y:2019:i:c:p:33-43
    DOI: 10.1016/j.ecolmodel.2019.03.011
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380019301085
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2019.03.011?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. McCarthy, Dominic & Townley, Stuart & Hodgson, Dave, 2008. "On second order sensitivity for stage-based population projection matrix models," Theoretical Population Biology, Elsevier, vol. 74(1), pages 68-73.
    2. Masami Fujiwara & Hal Caswell, 2001. "Demography of the endangered North Atlantic right whale," Nature, Nature, vol. 414(6863), pages 537-541, November.
    3. Stubben, Chris & Milligan, Brook, 2007. "Estimating and Analyzing Demographic Models Using the popbio Package in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 22(i11).
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Logofet, Dmitrii O. & Kazantseva, Elena S. & Onipchenko, Vladimir G., 2020. "Seed bank as a persistent problem in matrix population models: From uncertainty to certain bounds," Ecological Modelling, Elsevier, vol. 438(C).
    2. Dmitrii O. Logofet & Leonid L. Golubyatnikov & Nina G. Ulanova, 2020. "Realistic Choice of Annual Matrices Contracts the Range of λ S Estimates," Mathematics, MDPI, vol. 8(12), pages 1-15, December.
    3. Hsien-Yung Lin & Eduardo G. Martins & Michael Power & James A. Crossman & Alf J. Leake & Steven J. Cooke, 2022. "An assessment tool for estimating effects of entrainment at hydropower facilities on adfluvial fish populations," Environment Systems and Decisions, Springer, vol. 42(4), pages 556-571, December.
    4. Logofet, Dmitrii O. & Golubyatnikov, Leonid L. & Kazantseva, Elena S. & Belova, Iya N. & Ulanova, Nina G., 2023. "Thirteen years of monitoring an alpine short-lived perennial: Novel methods disprove the former assessment of population viability," Ecological Modelling, Elsevier, vol. 477(C).

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Graciá, Eva & Rodríguez-Caro, Roberto C. & Sanz-Aguilar, Ana & Anadón, José D. & Botella, Francisco & García-García, Angel Luis & Wiegand, Thorsten & Giménez, Andrés, 2020. "Assessment of the key evolutionary traits that prevent extinctions in human-altered habitats using a spatially explicit individual-based model," Ecological Modelling, Elsevier, vol. 415(C).
    2. Hsien-Yung Lin & Eduardo G. Martins & Michael Power & James A. Crossman & Alf J. Leake & Steven J. Cooke, 2022. "An assessment tool for estimating effects of entrainment at hydropower facilities on adfluvial fish populations," Environment Systems and Decisions, Springer, vol. 42(4), pages 556-571, December.
    3. Chiquet, Ross A. & Ma, Baoling & Ackleh, Azmy S. & Pal, Nabendu & Sidorovskaia, Natalia, 2013. "Demographic analysis of sperm whales using matrix population models," Ecological Modelling, Elsevier, vol. 248(C), pages 71-79.
    4. repec:jss:jstsof:22:i01 is not listed on IDEAS
    5. Banks, J.E. & Dick, L.K. & Banks, H.T. & Stark, J.D., 2008. "Time-varying vital rates in ecotoxicology: Selective pesticides and aphid population dynamics," Ecological Modelling, Elsevier, vol. 210(1), pages 155-160.
    6. Tremblay, Raymond L. & Tyre, Andrew J. & Pérez, Maria-Eglée & Ackerman, James D., 2021. "Population projections from holey matrices: Using prior information to estimate rare transition events," Ecological Modelling, Elsevier, vol. 447(C).
    7. Kneib, Thomas & Petzoldt, Thomas, 2007. "Introduction to the Special Volume on "Ecology and Ecological Modeling in R"," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 22(i01).
    8. Zhou, Can & Fujiwara, Masami & Grant, William E., 2013. "Dynamics of a predator–prey interaction with seasonal reproduction and continuous predation," Ecological Modelling, Elsevier, vol. 268(C), pages 25-36.
    9. Bramanti, Lorenzo & Iannelli, Mimmo & Santangelo, Giovanni, 2009. "Mathematical modelling for conservation and management of gorgonians corals: youngs and olds, could they coexist?," Ecological Modelling, Elsevier, vol. 220(21), pages 2851-2856.
    10. Caskenette, Amanda & Enders, Eva C. & Watkinson, Doug & Wrubleski, Dale, 2018. "Partial exclusion of spawning Cyprinus carpio to improve coastal marsh habitat may come at the cost of increased carp population growth," Ecological Modelling, Elsevier, vol. 385(C), pages 58-64.
    11. Davison, Raziel & Stadman, Marc & Jongejans, Eelke, 2019. "Stochastic effects contribute to population fitness differences," Ecological Modelling, Elsevier, vol. 408(C), pages 1-1.
    12. Rouby, Etienne & Authier, Matthieu & Cam, Emmanuelle & Siebert, Ursula & Plard, Floriane, 2024. "Addressing temporal trends in survivorship from cross-sectional sampling designs: A modelling framework with applications for megafauna conservation," Ecological Modelling, Elsevier, vol. 490(C).
    13. Mullen, Kaitlyn A. & Peterson, Michael L. & Todd, Sean K., 2013. "Has designating and protecting critical habitat had an impact on endangered North Atlantic right whale ship strike mortality?," Marine Policy, Elsevier, vol. 42(C), pages 293-304.
    14. Lewis, Dakota M. & Vardi, Tali & Maher, Rebecca L. & Correa, Adrienne M.S. & Cook, Geoffrey S., 2022. "Predicting shifts in demography of Orbicella franksi following simulated disturbance and restoration," Ecological Modelling, Elsevier, vol. 472(C).
    15. Clinton Stipek & Rolando Santos & Elizabeth Babcock & Diego Lirman, 2020. "Modelling the resilience of seagrass communities exposed to pulsed freshwater discharges: A seascape approach," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-15, February.
    16. Hernandez-Suarez, Carlos & Rabinovich, Jorge, 2024. "Exact confidence intervals for population growth rate, longevity and generation time," Theoretical Population Biology, Elsevier, vol. 155(C), pages 1-9.
    17. Otjacques, W. & De Laender, F. & Kestemont, P., 2016. "Discerning the causes of a decline in a common European fish, the roach (Rutilus rutilus L.): A modelling approach," Ecological Modelling, Elsevier, vol. 322(C), pages 92-100.
    18. Romanov, Michael S. & Masterov, Vladimir B., 2020. "Low breeding performance of the Steller’s sea eagle (Haliaeetus pelagicus) causes the populations to decline," Ecological Modelling, Elsevier, vol. 420(C).
    19. Barabás, György & Meszéna, Géza & Ostling, Annette, 2014. "Fixed point sensitivity analysis of interacting structured populations," Theoretical Population Biology, Elsevier, vol. 92(C), pages 97-106.
    20. Lewis, D.L. & Breck, S.W. & Wilson, K.R. & Webb, C.T., 2014. "Modeling black bear population dynamics in a human-dominated stochastic environment," Ecological Modelling, Elsevier, vol. 294(C), pages 51-58.
    21. Anaïs Gibert & Danièle Magda & Laurent Hazard, 2015. "Interplay between Endophyte Prevalence, Effects and Transmission: Insights from a Natural Grass Population," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-17, October.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:406:y:2019:i:c:p:33-43. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.