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Fish recruitment prediction, using robust supervised classification methods

Author

Listed:
  • Fernandes, Jose A.
  • Irigoien, Xabier
  • Goikoetxea, Nerea
  • Lozano, Jose A.
  • Inza, Iñaki
  • Pérez, Aritz
  • Bode, Antonio

Abstract

Improving our ability to predict recruitment is a key element in fisheries management. However, the interactions between population dynamics and different environmental factors are complex and often non-linear, making it difficult to produce robust predictions. ‘Machine-learning’ techniques (in particular, supervised classification methods) have been proposed as useful tools, to overcome such difficulties. In this study, a methodology is proposed to build a robust classifier for fish recruitment prediction with sparse and noisy data. The methodology consists of 4 steps: (1) a semi-automated recruitment discretization method; (2) supervised discretization of predictors; (3) multivariate and non-redundant predictors selection; (4) learning a probabilistic classifier. In terms of fisheries management, the classifier estimated performance has important consequences and, to be useful, the manager needs to know the risk that is being taken when using this number. Probabilistic classifiers such as ‘naive Bayes’, have the advantage that, in addition to the predictions, estimate also the probability of each possible outcome. Anchovy (Engraulis encrasicolus) and hake (Merluccius merluccius) recruitments are used as application examples. ‘Two-intervals’ recruitment discretization accomplishes 70% accuracies and Brier scores of around 0.10, for both anchovy and hake recruitment. In comparison, ‘three-intervals’ recruitment discretization accomplishes 50% accuracies; and Brier scores of around 0.25 for anchovy and 0.30 for hake recruitment. These statistics are the result of validating not only the classifier, but also the previous steps, as a whole methodology.

Suggested Citation

  • Fernandes, Jose A. & Irigoien, Xabier & Goikoetxea, Nerea & Lozano, Jose A. & Inza, Iñaki & Pérez, Aritz & Bode, Antonio, 2010. "Fish recruitment prediction, using robust supervised classification methods," Ecological Modelling, Elsevier, vol. 221(2), pages 338-352.
  • Handle: RePEc:eee:ecomod:v:221:y:2010:i:2:p:338-352
    DOI: 10.1016/j.ecolmodel.2009.09.020
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    References listed on IDEAS

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    1. Uusitalo, Laura, 2007. "Advantages and challenges of Bayesian networks in environmental modelling," Ecological Modelling, Elsevier, vol. 203(3), pages 312-318.
    2. Sebastiani, Paola & Ramoni, Marco, 2005. "Normative selection of Bayesian networks," Journal of Multivariate Analysis, Elsevier, vol. 93(2), pages 340-357, April.
    3. Dreyfus-León, Michel & Chen, D.G., 2007. "Recruitment prediction with genetic algorithms with application to the Pacific Herring fishery," Ecological Modelling, Elsevier, vol. 203(1), pages 141-146.
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    1. Ropero, R.F. & Aguilera, P.A. & Rumí, R., 2015. "Analysis of the socioecological structure and dynamics of the territory using a hybrid Bayesian network classifier," Ecological Modelling, Elsevier, vol. 311(C), pages 73-87.
    2. Fernandes, Jose A. & Santos, Lionel & Vance, Thomas & Fileman, Tim & Smith, David & Bishop, John D.D. & Viard, Frédérique & Queirós, Ana M. & Merino, Gorka & Buisman, Erik & Austen, Melanie C., 2016. "Costs and benefits to European shipping of ballast-water and hull-fouling treatment: Impacts of native and non-indigenous species," Marine Policy, Elsevier, vol. 64(C), pages 148-155.
    3. Crisci, C. & Ghattas, B. & Perera, G., 2012. "A review of supervised machine learning algorithms and their applications to ecological data," Ecological Modelling, Elsevier, vol. 240(C), pages 113-122.

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