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A Monte Carlo approach to quantifying model error in Bayesian parameter estimation

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  • White, Staci A.
  • Herbei, Radu

Abstract

Quantifying the discrepancy between two distributions is considered, using the concept of ϕ-divergence. The motivation is a Bayesian inference scenario where one is interested in comparing different posterior distributions. Strongly consistent estimators for the ϕ-divergence between two posterior distributions are developed. The proposed estimators alleviate known computational difficulties with estimating normalizing constants. This approach can be used to study the impact that using an approximate likelihood has on the resulting posterior distribution and also to compare the effectiveness of different model approximations. The methodology is applied to two first-order emulator models and an oceanographic application where evaluation of the likelihood function involves the solution to a partial differential equation.

Suggested Citation

  • White, Staci A. & Herbei, Radu, 2015. "A Monte Carlo approach to quantifying model error in Bayesian parameter estimation," Computational Statistics & Data Analysis, Elsevier, vol. 83(C), pages 168-181.
  • Handle: RePEc:eee:csdana:v:83:y:2015:i:c:p:168-181
    DOI: 10.1016/j.csda.2014.10.008
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    References listed on IDEAS

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    1. Lefebvre, Geneviève & Steele, Russell & Vandal, Alain C., 2010. "A path sampling identity for computing the Kullback-Leibler and J divergences," Computational Statistics & Data Analysis, Elsevier, vol. 54(7), pages 1719-1731, July.
    2. Jones, Galin L. & Haran, Murali & Caffo, Brian S. & Neath, Ronald, 2006. "Fixed-Width Output Analysis for Markov Chain Monte Carlo," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1537-1547, December.
    3. Higdon, Dave & Gattiker, James & Williams, Brian & Rightley, Maria, 2008. "Computer Model Calibration Using High-Dimensional Output," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 570-583, June.
    4. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    5. Marc C. Kennedy & Anthony O'Hagan, 2001. "Bayesian calibration of computer models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 63(3), pages 425-464.
    6. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    7. Chib S. & Jeliazkov I., 2001. "Marginal Likelihood From the Metropolis-Hastings Output," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 270-281, March.
    8. Alison L. Gibbs & Francis Edward Su, 2002. "On Choosing and Bounding Probability Metrics," International Statistical Review, International Statistical Institute, vol. 70(3), pages 419-435, December.
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