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Promote sign consistency in the joint estimation of precision matrices

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  • Zhang, Qingzhao
  • Ma, Shuangge
  • Huang, Yuan

Abstract

The Gaussian graphical model is a popular tool for inferring the relationships among random variables, where the precision matrix provides a natural interpretation of conditional independence. With high-dimensional data, sparsity of the precision matrix is often assumed, and various regularization methods have been applied for estimation. In several scenarios, it is desirable to conduct the joint estimation of multiple precision matrices. In joint estimation, entries corresponding to the same element of multiple precision matrices form a group, and group regularization methods have been applied for the estimation and identification of sparsity structures. In many practical examples, it can be difficult to interpret the results when parameters within the same group have conflicting signs. Unfortunately, existing methods lack an explicit mechanism in regards to sign consistency of group parameters. To tackle this problem, a novel regularization method is developed for the joint estimation of multiple precision matrices. It effectively enhances the sign consistency of group parameters and hence can lead to more interpretable results, while still allowing for conflicting signs to achieve full flexibility. The method’s consistency properties are rigorously established. Simulations show that the proposed method outperforms competing alternatives under a variety of settings. For the two data examples, the proposed approach leads to interpretable results that are different from the alternatives.

Suggested Citation

  • Zhang, Qingzhao & Ma, Shuangge & Huang, Yuan, 2021. "Promote sign consistency in the joint estimation of precision matrices," Computational Statistics & Data Analysis, Elsevier, vol. 159(C).
  • Handle: RePEc:eee:csdana:v:159:y:2021:i:c:s016794732100044x
    DOI: 10.1016/j.csda.2021.107210
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    References listed on IDEAS

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    1. Hansheng Wang & Bo Li & Chenlei Leng, 2009. "Shrinkage tuning parameter selection with a diverging number of parameters," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(3), pages 671-683, June.
    2. Fang, Kuangnan & Fan, Xinyan & Zhang, Qingzhao & Ma, Shuangge, 2018. "Integrative sparse principal component analysis," Journal of Multivariate Analysis, Elsevier, vol. 166(C), pages 1-16.
    3. Jianqing Fan & Yuan Liao & Han Liu, 2016. "An overview of the estimation of large covariance and precision matrices," Econometrics Journal, Royal Economic Society, vol. 19(1), pages 1-32, February.
    4. Jian Guo & Elizaveta Levina & George Michailidis & Ji Zhu, 2011. "Joint estimation of multiple graphical models," Biometrika, Biometrika Trust, vol. 98(1), pages 1-15.
    5. Lam, Clifford & Fan, Jianqing, 2009. "Sparsistency and rates of convergence in large covariance matrix estimation," LSE Research Online Documents on Economics 31540, London School of Economics and Political Science, LSE Library.
    6. Patrick Danaher & Pei Wang & Daniela M. Witten, 2014. "The joint graphical lasso for inverse covariance estimation across multiple classes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(2), pages 373-397, March.
    7. Yunzhang Zhu & Xiaotong Shen & Wei Pan, 2014. "Structural Pursuit Over Multiple Undirected Graphs," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1683-1696, December.
    8. Xin Cheng & Wenbin Lu & Mengling Liu, 2015. "Identification of homogeneous and heterogeneous variables in pooled cohort studies," Biometrics, The International Biometric Society, vol. 71(2), pages 397-403, June.
    9. van Wieringen, Wessel N. & Stam, Koen A. & Peeters, Carel F.W. & van de Wiel, Mark A., 2020. "Updating of the Gaussian graphical model through targeted penalized estimation," Journal of Multivariate Analysis, Elsevier, vol. 178(C).
    10. Yuan Huang & Qingzhao Zhang & Sanguo Zhang & Jian Huang & Shuangge Ma, 2017. "Promoting Similarity of Sparsity Structures in Integrative Analysis With Penalization," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(517), pages 342-350, January.
    11. Teng Zhang & Hui Zou, 2014. "Sparse precision matrix estimation via lasso penalized D-trace loss," Biometrika, Biometrika Trust, vol. 101(1), pages 103-120.
    12. Jin Liu & Shuangge Ma & Jian Huang, 2014. "Integrative Analysis of Cancer Diagnosis Studies with Composite Penalization," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 41(1), pages 87-103, March.
    13. Hansheng Wang & Runze Li & Chih-Ling Tsai, 2007. "Tuning parameter selectors for the smoothly clipped absolute deviation method," Biometrika, Biometrika Trust, vol. 94(3), pages 553-568.
    Full references (including those not matched with items on IDEAS)

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