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Likelihood-free inference in high dimensions with synthetic likelihood

Author

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  • Ong, Victor M.-H.
  • Nott, David J.
  • Tran, Minh-Ngoc
  • Sisson, Scott A.
  • Drovandi, Christopher C.

Abstract

One popular approach to likelihood-free inference is the synthetic likelihood method, which assumes that some data summary statistics which are informative about model parameters are approximately Gaussian for each value of the parameter. Based on this assumption, a Gaussian likelihood can be constructed, where the mean and covariance matrix of the summary statistics are estimated via Monte Carlo. The objective of the current work is to improve on a variational implementation of the Bayesian synthetic likelihood introduced recently in the literature, to enable the application of that approach to high-dimensional problems. Here high-dimensional can mean problems with more than one hundred parameters. The improvements introduced relate to shrinkage estimation of covariance matrices in estimation of the synthetic likelihood, improved implementation of control variate approaches to stochastic gradient variance reduction, and parsimonious but expressive parametrizations of variational normal posterior covariance matrices in terms of factor structures to reduce the dimension of the optimization problem. The shrinkage covariance estimation is particularly important for stability of stochastic gradient optimization with noisy likelihood estimates. However, as the dimension increases, the quality of the posterior approximation deteriorates unless the number of Monte Carlo samples used to estimate the synthetic likelihood also increases. We explore the properties of the method in some real examples in cases where either the number of summary statistics, the number of model parameters, or both, are large.

Suggested Citation

  • Ong, Victor M.-H. & Nott, David J. & Tran, Minh-Ngoc & Sisson, Scott A. & Drovandi, Christopher C., 2018. "Likelihood-free inference in high dimensions with synthetic likelihood," Computational Statistics & Data Analysis, Elsevier, vol. 128(C), pages 271-291.
  • Handle: RePEc:eee:csdana:v:128:y:2018:i:c:p:271-291
    DOI: 10.1016/j.csda.2018.07.008
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    1. Geweke, John & Zhou, Guofu, 1996. "Measuring the Pricing Error of the Arbitrage Pricing Theory," The Review of Financial Studies, Society for Financial Studies, vol. 9(2), pages 557-587.
    2. Warton, David I., 2008. "Penalized Normal Likelihood and Ridge Regularization of Correlation and Covariance Matrices," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 340-349, March.
    3. Heinz Neudecker & Shuangzhe Liu, 2001. "Some statistical properties of Hadamard products of random matrices," Statistical Papers, Springer, vol. 42(4), pages 475-487, October.
    4. Heinz Neudecker & Shuangzhe Liu, 2001. "Statistical properties of the Hadamard product of random vectors," Statistical Papers, Springer, vol. 42(4), pages 529-533, October.
    5. Simon N. Wood, 2010. "Statistical inference for noisy nonlinear ecological dynamic systems," Nature, Nature, vol. 466(7310), pages 1102-1104, August.
    6. Li, J. & Nott, D.J. & Fan, Y. & Sisson, S.A., 2017. "Extending approximate Bayesian computation methods to high dimensions via a Gaussian copula model," Computational Statistics & Data Analysis, Elsevier, vol. 106(C), pages 77-89.
    7. Rayner, G. D. & MacGillivray, H. L., 2002. "Weighted quantile-based estimation for a class of transformation distributions," Computational Statistics & Data Analysis, Elsevier, vol. 39(4), pages 401-433, June.
    8. Drovandi, Christopher C. & Pettitt, Anthony N., 2011. "Likelihood-free Bayesian estimation of multivariate quantile distributions," Computational Statistics & Data Analysis, Elsevier, vol. 55(9), pages 2541-2556, September.
    9. Ormerod, J. T. & Wand, M. P., 2010. "Explaining Variational Approximations," The American Statistician, American Statistical Association, vol. 64(2), pages 140-153.
    10. repec:dau:papers:123456789/5724 is not listed on IDEAS
    11. A. Doucet & M. K. Pitt & G. Deligiannidis & R. Kohn, 2015. "Efficient implementation of Markov chain Monte Carlo when using an unbiased likelihood estimator," Biometrika, Biometrika Trust, vol. 102(2), pages 295-313.
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    Cited by:

    1. Henri Pesonen & Umberto Simola & Alvaro Köhn‐Luque & Henri Vuollekoski & Xiaoran Lai & Arnoldo Frigessi & Samuel Kaski & David T. Frazier & Worapree Maneesoonthorn & Gael M. Martin & Jukka Corander, 2023. "ABC of the future," International Statistical Review, International Statistical Institute, vol. 91(2), pages 243-268, August.
    2. Priddle, Jacob W. & Drovandi, Christopher, 2023. "Transformations in semi-parametric Bayesian synthetic likelihood," Computational Statistics & Data Analysis, Elsevier, vol. 187(C).

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