IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v123y2018icp32-49.html
   My bibliography  Save this article

Clustering sparse binary data with hierarchical Bayesian Bernoulli mixture model

Author

Listed:
  • Ye, Mao
  • Zhang, Peng
  • Nie, Lizhen

Abstract

Sparsity in features presents a big technical challenge to existing clustering methods for categorical data. Hierarchical Bayesian Bernoulli mixture model (HBBMM) incorporates constrained empirical Bayes priors for model parameters, so the resulting Expectation Maximization (EM) algorithm of estimator searching is confined in a proper region. The EM algorithm enables to obtain the maximum a posterior (MAP) estimation, in which cluster labels are simultaneously assigned. Three criteria are proposed to identify defining features of individual clusters, leading to understanding of the underlying data structures. Information based model selection criterion is applied to determine the number of clusters. Estimation consistency and performance of model selection criteria are investigated. Two real-world sparse categorical datasets are analyzed with the proposed method.

Suggested Citation

  • Ye, Mao & Zhang, Peng & Nie, Lizhen, 2018. "Clustering sparse binary data with hierarchical Bayesian Bernoulli mixture model," Computational Statistics & Data Analysis, Elsevier, vol. 123(C), pages 32-49.
    • Handle: RePEc:eee:csdana:v:123:y:2018:i:c:p:32-49
    DOI: 10.1016/j.csda.2018.01.020
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S016794731830029X
    Download Restriction: Full text for ScienceDirect subscribers only.
    File URL: https://libkey.io/10.1016/j.csda.2018.01.020?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Floriello, Davide & Vitelli, Valeria, 2017. "Sparse clustering of functional data," Journal of Multivariate Analysis, Elsevier, vol. 154(C), pages 1-18.
    2. Stephen Johnson, 1967. "Hierarchical clustering schemes," Psychometrika, Springer;The Psychometric Society, vol. 32(3), pages 241-254, September.
    3. Gerhard Moser & Sang Hong Lee & Ben J Hayes & Michael E Goddard & Naomi R Wray & Peter M Visscher, 2015. "Simultaneous Discovery, Estimation and Prediction Analysis of Complex Traits Using a Bayesian Mixture Model," PLOS Genetics, Public Library of Science, vol. 11(4), pages 1-22, April.
    4. Zhang, Peng & Wang, Xiaogang & Song, Peter X.K., 2006. "Clustering Categorical Data Based on Distance Vectors," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 355-367, March.
    5. Dorit S. Hochbaum & David B. Shmoys, 1985. "A Best Possible Heuristic for the k -Center Problem," Mathematics of Operations Research, INFORMS, vol. 10(2), pages 180-184, May.
    6. Arias-Castro, Ery & Pu, Xiao, 2017. "A simple approach to sparse clustering," Computational Statistics & Data Analysis, Elsevier, vol. 105(C), pages 217-228.
    7. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    8. White, Arthur & Murphy, Thomas Brendan, 2014. "BayesLCA: An R Package for Bayesian Latent Class Analysis," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 61(i13).
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Buddhavarapu, Prasad & Bansal, Prateek & Prozzi, Jorge A., 2021. "A new spatial count data model with time-varying parameters," Transportation Research Part B: Methodological, Elsevier, vol. 150(C), pages 566-586.
    2. Mumtaz, Haroon & Theodoridis, Konstantinos, 2017. "Common and country specific economic uncertainty," Journal of International Economics, Elsevier, vol. 105(C), pages 205-216.
    3. Jesse Elliott & Zemin Bai & Shu-Ching Hsieh & Shannon E Kelly & Li Chen & Becky Skidmore & Said Yousef & Carine Zheng & David J Stewart & George A Wells, 2020. "ALK inhibitors for non-small cell lung cancer: A systematic review and network meta-analysis," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-18, February.
    4. Christina Leuker & Thorsten Pachur & Ralph Hertwig & Timothy J. Pleskac, 2019. "Do people exploit risk–reward structures to simplify information processing in risky choice?," Journal of the Economic Science Association, Springer;Economic Science Association, vol. 5(1), pages 76-94, August.
    5. Francois Olivier & Laval Guillaume, 2011. "Deviance Information Criteria for Model Selection in Approximate Bayesian Computation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-25, July.
    6. Raggi, Davide & Bordignon, Silvano, 2012. "Long memory and nonlinearities in realized volatility: A Markov switching approach," Computational Statistics & Data Analysis, Elsevier, vol. 56(11), pages 3730-3742.
    7. Angelica Gianfreda & Francesco Ravazzolo & Luca Rossini, 2023. "Large Time‐Varying Volatility Models for Hourly Electricity Prices," Oxford Bulletin of Economics and Statistics, Department of Economics, University of Oxford, vol. 85(3), pages 545-573, June.
    8. Claudia Quinteros-Cartaya & Guillermo Solorio-Magaña & Francisco Javier Núñez-Cornú & Felipe de Jesús Escalona-Alcázar & Diana Núñez, 2023. "Microearthquakes in the Guadalajara Metropolitan Zone, Mexico: evidence from buried active faults in Tesistán Valley, Zapopan," Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, Springer;International Society for the Prevention and Mitigation of Natural Hazards, vol. 116(3), pages 2797-2818, April.
    9. Katarzyna Hampel & Paulina Ucieklak-Jez & Agnieszka Bem, 2021. "Health System Responsiveness in the Light of the Euro Health Consumer Index," European Research Studies Journal, European Research Studies Journal, vol. 0(4B), pages 659-667.
    10. Rubio, F.J. & Steel, M.F.J., 2011. "Inference for grouped data with a truncated skew-Laplace distribution," Computational Statistics & Data Analysis, Elsevier, vol. 55(12), pages 3218-3231, December.
    11. Kim, Junyung & Shah, Asad Ullah Amin & Kang, Hyun Gook, 2020. "Dynamic risk assessment with bayesian network and clustering analysis," Reliability Engineering and System Safety, Elsevier, vol. 201(C).
    12. Alessandri, Piergiorgio & Mumtaz, Haroon, 2019. "Financial regimes and uncertainty shocks," Journal of Monetary Economics, Elsevier, vol. 101(C), pages 31-46.
    13. Padilla, Juan L. & Azevedo, Caio L.N. & Lachos, Victor H., 2018. "Multidimensional multiple group IRT models with skew normal latent trait distributions," Journal of Multivariate Analysis, Elsevier, vol. 167(C), pages 250-268.
    14. Svetlana V. Tishkovskaya & Paul G. Blackwell, 2021. "Bayesian estimation of heterogeneous environments from animal movement data," Environmetrics, John Wiley & Sons, Ltd., vol. 32(6), September.
    15. David Macro & Jeroen Weesie, 2016. "Inequalities between Others Do Matter: Evidence from Multiplayer Dictator Games," Games, MDPI, vol. 7(2), pages 1-23, April.
    16. Adrian O’Hagan & Arthur White, 2019. "Improved model-based clustering performance using Bayesian initialization averaging," Computational Statistics, Springer, vol. 34(1), pages 201-231, March.
    17. Tautenhahn, Susanne & Heilmeier, Hermann & Jung, Martin & Kahl, Anja & Kattge, Jens & Moffat, Antje & Wirth, Christian, 2012. "Beyond distance-invariant survival in inverse recruitment modeling: A case study in Siberian Pinus sylvestris forests," Ecological Modelling, Elsevier, vol. 233(C), pages 90-103.
    18. Julian P. T. Higgins & Simon G. Thompson & David J. Spiegelhalter, 2009. "A re‐evaluation of random‐effects meta‐analysis," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 172(1), pages 137-159, January.
    19. Simon Mak & Derek Bingham & Yi Lu, 2016. "A regional compound Poisson process for hurricane and tropical storm damage," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 65(5), pages 677-703, November.
    20. Xi, Yanhui & Peng, Hui & Qin, Yemei & Xie, Wenbiao & Chen, Xiaohong, 2015. "Bayesian analysis of heavy-tailed market microstructure model and its application in stock markets," Mathematics and Computers in Simulation (MATCOM), Elsevier, vol. 117(C), pages 141-153.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:123:y:2018:i:c:p:32-49. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.