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Bayesian group bridge for bi-level variable selection

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  • Mallick, Himel
  • Yi, Nengjun

Abstract

A Bayesian bi-level variable selection method (BAGB: Bayesian Analysis of Group Bridge) is developed for regularized regression and classification. This new development is motivated by grouped data, where generic variables can be divided into multiple groups, with variables in the same group being mechanistically related or statistically correlated. As an alternative to frequentist group variable selection methods, BAGB incorporates structural information among predictors through a group-wise shrinkage prior. Posterior computation proceeds via an efficient MCMC algorithm. In addition to the usual ease-of-interpretation of hierarchical linear models, the Bayesian formulation produces valid standard errors, a feature that is notably absent in the frequentist framework. Empirical evidence of the attractiveness of the method is illustrated by extensive Monte Carlo simulations and real data analysis. Finally, several extensions of this new approach are presented, providing a unified framework for bi-level variable selection in general models with flexible penalties.

Suggested Citation

  • Mallick, Himel & Yi, Nengjun, 2017. "Bayesian group bridge for bi-level variable selection," Computational Statistics & Data Analysis, Elsevier, vol. 110(C), pages 115-133.
    • Handle: RePEc:eee:csdana:v:110:y:2017:i:c:p:115-133
    DOI: 10.1016/j.csda.2017.01.002
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    References listed on IDEAS

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    1. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    2. Nicholas G. Polson & James G. Scott & Jesse Windle, 2014. "The Bayesian bridge," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(4), pages 713-733, September.
    3. Li, Hanning & Pati, Debdeep, 2017. "Variable selection using shrinkage priors," Computational Statistics & Data Analysis, Elsevier, vol. 107(C), pages 107-119.
    4. Chakraborty, Sounak & Guo, Ruixin, 2011. "A Bayesian hybrid Huberized support vector machine and its applications in high-dimensional medical data," Computational Statistics & Data Analysis, Elsevier, vol. 55(3), pages 1342-1356, March.
    5. Patrick Breheny, 2015. "The group exponential lasso for bi‐level variable selection," Biometrics, The International Biometric Society, vol. 71(3), pages 731-740, September.
    6. Jian Huang & Shuange Ma & Huiliang Xie & Cun-Hui Zhang, 2009. "A group bridge approach for variable selection," Biometrika, Biometrika Trust, vol. 96(2), pages 339-355.
    7. Wang, Hansheng & Leng, Chenlei, 2007. "Unified LASSO Estimation by Least Squares Approximation," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 1039-1048, September.
    8. Chenlei Leng & Minh-Ngoc Tran & David Nott, 2014. "Bayesian adaptive Lasso," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 66(2), pages 221-244, April.
    9. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
    10. Zhigeng Geng & Sijian Wang & Menggang Yu & Patrick O. Monahan & Victoria Champion & Grace Wahba, 2015. "Group variable selection via convex log-exp-sum penalty with application to a breast cancer survivor study," Biometrics, The International Biometric Society, vol. 71(1), pages 53-62, March.
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