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The use of random-effect models for high-dimensional variable selection problems

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  • Kwon, Sunghoon
  • Oh, Seungyoung
  • Lee, Youngjo

Abstract

We study the use of random-effect models for variable selection in high-dimensional generalized linear models where the number of covariates exceeds the sample size. Certain distributional assumptions on the random effects produce a penalty that is non-convex and unbounded at the origin. We introduce a unified algorithm that can be applied to various statistical models including generalized linear models. Simulation studies and data analysis are provided.

Suggested Citation

  • Kwon, Sunghoon & Oh, Seungyoung & Lee, Youngjo, 2016. "The use of random-effect models for high-dimensional variable selection problems," Computational Statistics & Data Analysis, Elsevier, vol. 103(C), pages 401-412.
    • Handle: RePEc:eee:csdana:v:103:y:2016:i:c:p:401-412
    DOI: 10.1016/j.csda.2016.05.016
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    References listed on IDEAS

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    1. Robert Tibshirani & Michael Saunders & Saharon Rosset & Ji Zhu & Keith Knight, 2005. "Sparsity and smoothness via the fused lasso," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(1), pages 91-108, February.
    2. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    3. Yuhong Yang, 2005. "Can the strengths of AIC and BIC be shared? A conflict between model indentification and regression estimation," Biometrika, Biometrika Trust, vol. 92(4), pages 937-950, December.
    4. Lee Woojoo & Lee Donghwan & Lee Youngjo & Pawitan Yudi, 2011. "Sparse Canonical Covariance Analysis for High-throughput Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-24, July.
    5. Youngjo Lee & John A. Nelder, 2006. "Double hierarchical generalized linear models (with discussion)," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 55(2), pages 139-185, April.
    6. Yingying Fan & Cheng Yong Tang, 2013. "Tuning parameter selection in high dimensional penalized likelihood," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 75(3), pages 531-552, June.
    7. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    8. Kim, Yongdai & Choi, Hosik & Oh, Hee-Seok, 2008. "Smoothly Clipped Absolute Deviation on High Dimensions," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1665-1673.
    9. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
    10. Xiaotong Shen & Wei Pan & Yunzhang Zhu, 2012. "Likelihood-Based Selection and Sharp Parameter Estimation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(497), pages 223-232, March.
    11. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    12. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
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    Cited by:

    1. Olivier Collignon & Jeongseop Han & Hyungmi An & Seungyoung Oh & Youngjo Lee, 2018. "Comparison of the modified unbounded penalty and the LASSO to select predictive genes of response to chemotherapy in breast cancer," PLOS ONE, Public Library of Science, vol. 13(10), pages 1-15, October.
    2. Lee, Sangin & Lee, Youngjo & Pawitan, Yudi, 2018. "Sparse pathway-based prediction models for high-throughput molecular data," Computational Statistics & Data Analysis, Elsevier, vol. 126(C), pages 125-135.
    3. Alexander Kirpich & Elizabeth A Ainsworth & Jessica M Wedow & Jeremy R B Newman & George Michailidis & Lauren M McIntyre, 2018. "Variable selection in omics data: A practical evaluation of small sample sizes," PLOS ONE, Public Library of Science, vol. 13(6), pages 1-19, June.

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