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Bayesian interaction selection model for multimodal neuroimaging data analysis

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  • Yize Zhao
  • Ben Wu
  • Jian Kang

Abstract

Multimodality or multiconstruct data arise increasingly in functional neuroimaging studies to characterize brain activity under different cognitive states. Relying on those high‐resolution imaging collections, it is of great interest to identify predictive imaging markers and intermodality interactions with respect to behavior outcomes. Currently, most of the existing variable selection models do not consider predictive effects from interactions, and the desired higher‐order terms can only be included in the predictive mechanism following a two‐step procedure, suffering from potential misspecification. In this paper, we propose a unified Bayesian prior model to simultaneously identify main effect features and intermodality interactions within the same inference platform in the presence of high‐dimensional data. To accommodate the brain topological information and correlation between modalities, our prior is designed by compiling the intermediate selection status of sequential partitions in light of the data structure and brain anatomical architecture, so that we can improve posterior inference and enhance biological plausibility. Through extensive simulations, we show the superiority of our approach in main and interaction effects selection, and prediction under multimodality data. Applying the method to the Adolescent Brain Cognitive Development (ABCD) study, we characterize the brain functional underpinnings with respect to general cognitive ability under different memory load conditions.

Suggested Citation

  • Yize Zhao & Ben Wu & Jian Kang, 2023. "Bayesian interaction selection model for multimodal neuroimaging data analysis," Biometrics, The International Biometric Society, vol. 79(2), pages 655-668, June.
  • Handle: RePEc:bla:biomet:v:79:y:2023:i:2:p:655-668
    DOI: 10.1111/biom.13648
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    References listed on IDEAS

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    1. Xiao Wang & Hongtu Zhu, 2017. "Generalized Scalar-on-Image Regression Models via Total Variation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(519), pages 1156-1168, July.
    2. Carlos M. Carvalho & Nicholas G. Polson & James G. Scott, 2010. "The horseshoe estimator for sparse signals," Biometrika, Biometrika Trust, vol. 97(2), pages 465-480.
    3. Patrick Danaher & Pei Wang & Daniela M. Witten, 2014. "The joint graphical lasso for inverse covariance estimation across multiple classes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(2), pages 373-397, March.
    4. S. C. Kou & Benjamin P. Olding & Martin Lysy & Jun S. Liu, 2012. "A Multiresolution Method for Parameter Estimation of Diffusion Processes," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(500), pages 1558-1574, December.
    5. Lin Zhang & Veerabhadran Baladandayuthapani & Bani K. Mallick & Ganiraju C. Manyam & Patricia A. Thompson & Melissa L. Bondy & Kim-Anh Do, 2014. "Bayesian hierarchical structured variable selection methods with application to molecular inversion probe studies in breast cancer," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 63(4), pages 595-620, August.
    6. Yize Zhao & Matthias Chung & Brent A. Johnson & Carlos S. Moreno & Qi Long, 2016. "Hierarchical Feature Selection Incorporating Known and Novel Biological Information: Identifying Genomic Features Related to Prostate Cancer Recurrence," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1427-1439, October.
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