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A marginal moment matching approach for fitting endemic‐epidemic models to underreported disease surveillance counts

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  • Johannes Bracher
  • Leonhard Held

Abstract

Count data are often subject to underreporting, especially in infectious disease surveillance. We propose an approximate maximum likelihood method to fit count time series models from the endemic‐epidemic class to underreported data. The approach is based on marginal moment matching where underreported processes are approximated through completely observed processes from the same class. Moreover, the form of the bias when underreporting is ignored or taken into account via multiplication factors is analyzed. Notably, we show that this leads to a downward bias in model‐based estimates of the effective reproductive number. A marginal moment matching approach can also be used to account for reporting intervals which are longer than the mean serial interval of a disease. The good performance of the proposed methodology is demonstrated in simulation studies. An extension to time‐varying parameters and reporting probabilities is discussed and applied in a case study on weekly rotavirus gastroenteritis counts in Berlin, Germany.

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  • Johannes Bracher & Leonhard Held, 2021. "A marginal moment matching approach for fitting endemic‐epidemic models to underreported disease surveillance counts," Biometrics, The International Biometric Society, vol. 77(4), pages 1202-1214, December.
    • Handle: RePEc:bla:biomet:v:77:y:2021:i:4:p:1202-1214
    DOI: 10.1111/biom.13371
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    1. Cici Bauer & Jon Wakefield, 2018. "Stratified space–time infectious disease modelling, with an application to hand, foot and mouth disease in China," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 67(5), pages 1379-1398, November.
    2. Andrea Silvestrini & David Veredas, 2008. "Temporal Aggregation Of Univariate And Multivariate Time Series Models: A Survey," Journal of Economic Surveys, Wiley Blackwell, vol. 22(3), pages 458-497, July.
    3. Staudenmayer, John & Buonaccorsi, John P., 2005. "Measurement Error in Linear Autoregressive Models," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 841-852, September.
    4. King, Aaron A. & Nguyen, Dao & Ionides, Edward L., 2016. "Statistical Inference for Partially Observed Markov Processes via the R Package pomp," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 69(i12).
    5. Fukang Zhu, 2011. "A negative binomial integer‐valued GARCH model," Journal of Time Series Analysis, Wiley Blackwell, vol. 32(1), pages 54-67, January.
    6. Cui, Yunwei & Zheng, Qi, 2017. "Conditional maximum likelihood estimation for a class of observation-driven time series models for count data," Statistics & Probability Letters, Elsevier, vol. 123(C), pages 193-201.
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