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Registration for exponential family functional data

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  • Julia Wrobel
  • Vadim Zipunnikov
  • Jennifer Schrack
  • Jeff Goldsmith

Abstract

We introduce a novel method for separating amplitude and phase variability in exponential family functional data. Our method alternates between two steps: the first uses generalized functional principal components analysis to calculate template functions, and the second estimates smooth warping functions that map observed curves to templates. Existing approaches to registration have primarily focused on continuous functional observations, and the few approaches for discrete functional data require a pre‐smoothing step; these methods are frequently computationally intensive. In contrast, we focus on the likelihood of the observed data and avoid the need for preprocessing, and we implement both steps of our algorithm in a computationally efficient way. Our motivation comes from the Baltimore Longitudinal Study on Aging, in which accelerometer data provides valuable insights into the timing of sedentary behavior. We analyze binary functional data with observations each minute over 24 hours for 592 participants, where values represent activity and inactivity. Diurnal patterns of activity are obscured due to misalignment in the original data but are clear after curves are aligned. Simulations designed to mimic the application indicate that the proposed methods outperform competing approaches in terms of estimation accuracy and computational efficiency. Code for our method and simulations is publicly available.

Suggested Citation

  • Julia Wrobel & Vadim Zipunnikov & Jennifer Schrack & Jeff Goldsmith, 2019. "Registration for exponential family functional data," Biometrics, The International Biometric Society, vol. 75(1), pages 48-57, March.
  • Handle: RePEc:bla:biomet:v:75:y:2019:i:1:p:48-57
    DOI: 10.1111/biom.12963
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    References listed on IDEAS

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    1. Kneip, Alois & Ramsay, James O, 2008. "Combining Registration and Fitting for Functional Models," Journal of the American Statistical Association, American Statistical Association, vol. 103(483), pages 1155-1165.
    2. Gertheiss, Jan & Goldsmith, Jeff & Staicu, Ana-Maria, 2017. "A note on modeling sparse exponential-family functional response curves," Computational Statistics & Data Analysis, Elsevier, vol. 105(C), pages 46-52.
    3. Michael E. Tipping & Christopher M. Bishop, 1999. "Probabilistic Principal Component Analysis," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(3), pages 611-622.
    4. Hui Huang & Yehua Li & Yongtao Guan, 2014. "Joint Modeling and Clustering Paired Generalized Longitudinal Trajectories With Application to Cocaine Abuse Treatment Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1412-1424, December.
    5. Jeff Goldsmith & Vadim Zipunnikov & Jennifer Schrack, 2015. "Generalized multilevel function-on-scalar regression and principal component analysis," Biometrics, The International Biometric Society, vol. 71(2), pages 344-353, June.
    6. Yao, Fang & Muller, Hans-Georg & Wang, Jane-Ling, 2005. "Functional Data Analysis for Sparse Longitudinal Data," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 577-590, June.
    7. J. Goldsmith & S. Greven & C. Crainiceanu, 2013. "Corrected Confidence Bands for Functional Data Using Principal Components," Biometrics, The International Biometric Society, vol. 69(1), pages 41-51, March.
    8. Peter Hall & Hans‐Georg Müller & Fang Yao, 2008. "Modelling sparse generalized longitudinal observations with latent Gaussian processes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(4), pages 703-723, September.
    9. van der Linde, Angelika, 2008. "Variational Bayesian functional PCA," Computational Statistics & Data Analysis, Elsevier, vol. 53(2), pages 517-533, December.
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    Cited by:

    1. Craig, Sarah J.C. & Kenney, Ana M. & Lin, Junli & Paul, Ian M. & Birch, Leann L. & Savage, Jennifer S. & Marini, Michele E. & Chiaromonte, Francesca & Reimherr, Matthew L. & Makova, Kateryna D., 2023. "Constructing a polygenic risk score for childhood obesity using functional data analysis," Econometrics and Statistics, Elsevier, vol. 25(C), pages 66-86.
    2. Derek Tucker, J. & Shand, Lyndsay & Chowdhary, Kenny, 2021. "Multimodal Bayesian registration of noisy functions using Hamiltonian Monte Carlo," Computational Statistics & Data Analysis, Elsevier, vol. 163(C).
    3. Hsin‐wen Chang & Ian W. McKeague, 2022. "Empirical likelihood‐based inference for functional means with application to wearable device data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 84(5), pages 1947-1968, November.
    4. Daniel Backenroth & Russell T. Shinohara & Jennifer A. Schrack & Jeff Goldsmith, 2020. "Nonnegative decomposition of functional count data," Biometrics, The International Biometric Society, vol. 76(4), pages 1273-1284, December.

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