Integrative genetic risk prediction using non-parametric empirical Bayes classification
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- Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
- Frank Dudbridge, 2013. "Power and Predictive Accuracy of Polygenic Risk Scores," PLOS Genetics, Public Library of Science, vol. 9(3), pages 1-17, March.
- Koenker, Roger & Mizera, Ivan, 2014. "Convex Optimization in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 60(i05).
- Jingchunzi Shi & Seunggeun Lee, 2016. "A novel random effect model for GWAS meta-analysis and its application to trans-ethnic meta-analysis," Biometrics, The International Biometric Society, vol. 72(3), pages 945-954, September.
- Qing Mai & Hui Zou & Ming Yuan, 2012. "A direct approach to sparse discriminant analysis in ultra-high dimensions," Biometrika, Biometrika Trust, vol. 99(1), pages 29-42.
- Roger Koenker & Ivan Mizera, 2014. "Convex Optimization, Shape Constraints, Compound Decisions, and Empirical Bayes Rules," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(506), pages 674-685, June.
- Jianqing Fan & Yang Feng & Xin Tong, 2012. "A road to classification in high dimensional space: the regularized optimal affine discriminant," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(4), pages 745-771, September.
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