Tail Posterior Probability for Inference in Pairwise and Multiclass Gene Expression Data
Author
Abstract
Suggested Citation
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Smyth Gordon K, 2004. "Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 3(1), pages 1-28, February.
- Raphael Gottardo & Adrian E. Raftery & Ka Yee Yeung & Roger E. Bumgarner, 2006. "Bayesian Robust Inference for Differential Gene Expression in Microarrays with Multiple Samples," Biometrics, The International Biometric Society, vol. 62(1), pages 10-18, March.
- John D. Storey, 2002. "A direct approach to false discovery rates," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(3), pages 479-498, August.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Montazeri Zahra & Yanofsky Corey M. & Bickel David R., 2010. "Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-33, June.
- Wenge Guo & Sanat K. Sarkar & Shyamal D. Peddada, 2010. "Controlling False Discoveries in Multidimensional Directional Decisions, with Applications to Gene Expression Data on Ordered Categories," Biometrics, The International Biometric Society, vol. 66(2), pages 485-492, June.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Shigeyuki Matsui & Hisashi Noma, 2011. "Estimating Effect Sizes of Differentially Expressed Genes for Power and Sample-Size Assessments in Microarray Experiments," Biometrics, The International Biometric Society, vol. 67(4), pages 1225-1235, December.
- Santu Ghosh & Alan M. Polansky, 2022. "Large-Scale Simultaneous Testing Using Kernel Density Estimation," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 84(2), pages 808-843, August.
- Shigeyuki Matsui & Shu Zeng & Takeharu Yamanaka & John Shaughnessy, 2008. "Sample Size Calculations Based on Ranking and Selection in Microarray Experiments," Biometrics, The International Biometric Society, vol. 64(1), pages 217-226, March.
- Ming Yuan & Christina Kendziorski, 2006. "A Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification," Biometrics, The International Biometric Society, vol. 62(4), pages 1089-1098, December.
- Simina M. Boca & Héctor Corrada Bravo & Brian Caffo & Jeffrey T. Leek & Giovanni Parmigiani, 2013. "A Decision‐Theory Approach to Interpretable Set Analysis for High‐Dimensional Data," Biometrics, The International Biometric Society, vol. 69(3), pages 614-623, September.
- Leek Jeffrey T & Storey John D., 2011. "The Joint Null Criterion for Multiple Hypothesis Tests," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-22, June.
- Marko Sysi-Aho & Andrey Ermolov & Peddinti V Gopalacharyulu & Abhishek Tripathi & Tuulikki Seppänen-Laakso & Johanna Maukonen & Ismo Mattila & Suvi T Ruohonen & Laura Vähätalo & Laxman Yetukuri & Tain, 2011. "Metabolic Regulation in Progression to Autoimmune Diabetes," PLOS Computational Biology, Public Library of Science, vol. 7(10), pages 1-16, October.
- Hironori Fujisawa & Takayuki Sakaguchi, 2012. "Optimal significance analysis of microarray data in a class of tests whose null statistic can be constructed," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 21(2), pages 280-300, June.
- Hongkai Ji & Wing Hung Wong, 2006. "Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes," Biometrics, The International Biometric Society, vol. 62(3), pages 645-663, September.
- Hong, Zhaoping & Lian, Heng, 2012. "BOPA: A Bayesian hierarchical model for outlier expression detection," Computational Statistics & Data Analysis, Elsevier, vol. 56(12), pages 4146-4156.
- Hwang J.T. Gene & Liu Peng, 2010. "Optimal Tests Shrinking Both Means and Variances Applicable to Microarray Data Analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-35, October.
- Huiping Zhang & Fan Wang & Henry R Kranzler & Hongyu Zhao & Joel Gelernter, 2013. "Profiling of Childhood Adversity-Associated DNA Methylation Changes in Alcoholic Patients and Healthy Controls," PLOS ONE, Public Library of Science, vol. 8(6), pages 1-9, June.
- Dørum Guro & Snipen Lars & Solheim Margrete & Sæbø Solve, 2009. "Rotation Testing in Gene Set Enrichment Analysis for Small Direct Comparison Experiments," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-26, July.
- Haibing Zhao & Xinping Cui, 2020. "Constructing confidence intervals for selected parameters," Biometrics, The International Biometric Society, vol. 76(4), pages 1098-1108, December.
- Ji Tieming & Liu Peng & Nettleton Dan, 2012. "Borrowing Information Across Genes and Experiments for Improved Error Variance Estimation in Microarray Data Analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(3), pages 1-29, May.
- Aaron C Ericsson & J Wade Davis & William Spollen & Nathan Bivens & Scott Givan & Catherine E Hagan & Mark McIntosh & Craig L Franklin, 2015. "Effects of Vendor and Genetic Background on the Composition of the Fecal Microbiota of Inbred Mice," PLOS ONE, Public Library of Science, vol. 10(2), pages 1-19, February.
- Youngchao Ge & Sandrine Dudoit & Terence Speed, 2003. "Resampling-based multiple testing for microarray data analysis," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 12(1), pages 1-77, June.
- Bajgrowicz, Pierre & Scaillet, Olivier, 2012.
"Technical trading revisited: False discoveries, persistence tests, and transaction costs,"
Journal of Financial Economics, Elsevier, vol. 106(3), pages 473-491.
- Pierre Bajgrowicz & Olivier Scaillet, 2008. "Technical Trading Revisited: False Discoveries, Persistence Tests, and Transaction Costs," Swiss Finance Institute Research Paper Series 08-05, Swiss Finance Institute, revised Jul 2009.
- Wen Shi & Xi Chen & Jennifer Shang, 2019. "An Efficient Morris Method-Based Framework for Simulation Factor Screening," INFORMS Journal on Computing, INFORMS, vol. 31(4), pages 745-770, October.
- Hossain, Ahmed & Beyene, Joseph & Willan, Andrew R. & Hu, Pingzhao, 2009. "A flexible approximate likelihood ratio test for detecting differential expression in microarray data," Computational Statistics & Data Analysis, Elsevier, vol. 53(10), pages 3685-3695, August.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bla:biomet:v:63:y:2007:i:4:p:1117-1125. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.blackwellpublishing.com/journal.asp?ref=0006-341X .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.