IDEAS home Printed from https://ideas.repec.org/a/bla/biomet/v63y2007i1p259-271.html
   My bibliography  Save this article

Predicting Patient Survival from Microarray Data by Accelerated Failure Time Modeling Using Partial Least Squares and LASSO

Author

Listed:
  • Susmita Datta
  • Jennifer Le-Rademacher
  • Somnath Datta

Abstract

No abstract is available for this item.

Suggested Citation

  • Susmita Datta & Jennifer Le-Rademacher & Somnath Datta, 2007. "Predicting Patient Survival from Microarray Data by Accelerated Failure Time Modeling Using Partial Least Squares and LASSO," Biometrics, The International Biometric Society, vol. 63(1), pages 259-271, March.
  • Handle: RePEc:bla:biomet:v:63:y:2007:i:1:p:259-271
    as

    Download full text from publisher

    File URL: http://hdl.handle.net/10.1111/j.1541-0420.2006.00660.x
    Download Restriction: Access to full text is restricted to subscribers.
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Jie Huang & David Harrington, 2005. "Iterative Partial Least Squares with Right-Censored Data Analysis: A Comparison to Other Dimension Reduction Techniques," Biometrics, The International Biometric Society, vol. 61(1), pages 17-24, March.
    2. James M. Robins & Dianne M. Finkelstein, 2000. "Correcting for Noncompliance and Dependent Censoring in an AIDS Clinical Trial with Inverse Probability of Censoring Weighted (IPCW) Log-Rank Tests," Biometrics, The International Biometric Society, vol. 56(3), pages 779-788, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Fei Liu & David Dunson & Fei Zou, 2011. "High-Dimensional Variable Selection in Meta-Analysis for Censored Data," Biometrics, The International Biometric Society, vol. 67(2), pages 504-512, June.
    2. Fan, Jie & Datta, Somnath, 2011. "Fitting marginal accelerated failure time models to clustered survival data with potentially informative cluster size," Computational Statistics & Data Analysis, Elsevier, vol. 55(12), pages 3295-3303, December.
    3. Yang, Yuan & McMahan, Christopher S. & Wang, Yu-Bo & Ouyang, Yuyuan, 2024. "Estimation of l0 norm penalized models: A statistical treatment," Computational Statistics & Data Analysis, Elsevier, vol. 192(C).
    4. Wang Zhu & Wang C.Y., 2010. "Buckley-James Boosting for Survival Analysis with High-Dimensional Biomarker Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-33, June.
    5. Ma, Shuangge & Dai, Ying & Huang, Jian & Xie, Yang, 2012. "Identification of breast cancer prognosis markers via integrative analysis," Computational Statistics & Data Analysis, Elsevier, vol. 56(9), pages 2718-2728.
    6. Engler David & Li Yi, 2009. "Survival Analysis with High-Dimensional Covariates: An Application in Microarray Studies," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-24, February.
    7. T. Cai & J. Huang & L. Tian, 2009. "Regularized Estimation for the Accelerated Failure Time Model," Biometrics, The International Biometric Society, vol. 65(2), pages 394-404, June.
    8. Chen, Xi & Wang, Lily & Ishwaran, Hemant, 2010. "An integrative pathway-based clinical-genomic model for cancer survival prediction," Statistics & Probability Letters, Elsevier, vol. 80(17-18), pages 1313-1319, September.
    9. Zhihua Sun & Yi Liu & Kani Chen & Gang Li, 2022. "Broken adaptive ridge regression for right-censored survival data," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 74(1), pages 69-91, February.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Rachel Axelrod & Daniel Nevo, 2023. "A sensitivity analysis approach for the causal hazard ratio in randomized and observational studies," Biometrics, The International Biometric Society, vol. 79(3), pages 2743-2756, September.
    2. Yanyao Yi & Ting Ye & Menggang Yu & Jun Shao, 2020. "Cox regression with survival‐time‐dependent missing covariate values," Biometrics, The International Biometric Society, vol. 76(2), pages 460-471, June.
    3. Michael Rosenblum & Nicholas P. Jewell & Mark van der Laan & Stephen Shiboski & Ariane van der Straten & Nancy Padian, 2009. "Analysing direct effects in randomized trials with secondary interventions: an application to human immunodeficiency virus prevention trials," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 172(2), pages 443-465, April.
    4. Douglas E. Schaubel & Guanghui Wei, 2011. "Double Inverse-Weighted Estimation of Cumulative Treatment Effects Under Nonproportional Hazards and Dependent Censoring," Biometrics, The International Biometric Society, vol. 67(1), pages 29-38, March.
    5. Wang Zhu & Wang C.Y., 2010. "Buckley-James Boosting for Survival Analysis with High-Dimensional Biomarker Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-33, June.
    6. Romin Pajouheshnia & Noah A. Schuster & Rolf H. H. Groenwold & Frans H. Rutten & Karel G. M. Moons & Linda M. Peelen, 2020. "Accounting for time‐dependent treatment use when developing a prognostic model from observational data: A review of methods," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 74(1), pages 38-51, February.
    7. Greg DiRienzo, 2004. "Nonparametric Comparison of Two Survival-Time Distributions in the Presence of Dependent Censoring," Harvard University Biostatistics Working Paper Series 1000, Berkeley Electronic Press.
    8. Daniel Scharfstein & James M. Robins & Wesley Eddings & Andrea Rotnitzky, 2001. "Inference in Randomized Studies with Informative Censoring and Discrete Time-to-Event Endpoints," Biometrics, The International Biometric Society, vol. 57(2), pages 404-413, June.
    9. Sujatro Chakladar & Samuel Rosin & Michael G. Hudgens & M. Elizabeth Halloran & John D. Clemens & Mohammad Ali & Michael E. Emch, 2022. "Inverse probability weighted estimators of vaccine effects accommodating partial interference and censoring," Biometrics, The International Biometric Society, vol. 78(2), pages 777-788, June.
    10. Tala Al-Rousan & Jeffrey A Sparks & Mary Pettinger & Rowan Chlebowski & JoAnn E Manson & Andrew M Kauntiz & Robert Wallace, 2018. "Menopausal hormone therapy and the incidence of carpal tunnel syndrome in postmenopausal women: Findings from the Women’s Health Initiative," PLOS ONE, Public Library of Science, vol. 13(12), pages 1-15, December.
    11. Meoli, Azzurra & Piva, Evila & Righi, Hérica, 2024. "Missing women in STEM occupations: The impact of university education on the gender gap in graduates' transition to work," Research Policy, Elsevier, vol. 53(8).
    12. A. G. DiRienzo, 2003. "Nonparametric Comparison of Two Survival-Time Distributions in the Presence of Dependent Censoring," Biometrics, The International Biometric Society, vol. 59(3), pages 497-504, September.
    13. Shuxi Zeng & Elizabeth C. Lange & Elizabeth A. Archie & Fernando A. Campos & Susan C. Alberts & Fan Li, 2023. "A Causal Mediation Model for Longitudinal Mediators and Survival Outcomes with an Application to Animal Behavior," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 28(2), pages 197-218, June.
    14. Qi Gong & Douglas E. Schaubel, 2013. "Partly Conditional Estimation of the Effect of a Time-Dependent Factor in the Presence of Dependent Censoring," Biometrics, The International Biometric Society, vol. 69(2), pages 338-347, June.
    15. Pao-sheng Shen, 2011. "Nonparametric estimators of the survival function with twice censored data," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 63(6), pages 1207-1219, December.
    16. Sijian Wang & Bin Nan & Ji Zhu & David G. Beer, 2008. "Doubly Penalized Buckley–James Method for Survival Data with High-Dimensional Covariates," Biometrics, The International Biometric Society, vol. 64(1), pages 132-140, March.
    17. Lori E. Dodd & Edward L. Korn & Boris Freidlin & Robert Gray & Suman Bhattacharya, 2011. "An Audit Strategy for Progression-Free Survival," Biometrics, The International Biometric Society, vol. 67(3), pages 1092-1099, September.
    18. Miguel A. Hernán & James M. Robins & Luis A. García Rodríguez, 2005. "Discussion on "Statistical Issues Arising in the Women's Health Initiative"," Biometrics, The International Biometric Society, vol. 61(4), pages 922-930, December.
    19. Shen, Pao-sheng, 2009. "An inverse-probability-weighted approach to the estimation of distribution function with doubly censored data," Statistics & Probability Letters, Elsevier, vol. 79(9), pages 1269-1276, May.
    20. Chiu-Hsieh Hsu & Jeremy Taylor & Susan Murray, 2004. "Survival Analysis USing Auxiliary Variables Via Nonparametric Multiple Imputation," The University of Michigan Department of Biostatistics Working Paper Series 1026, Berkeley Electronic Press.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bla:biomet:v:63:y:2007:i:1:p:259-271. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.blackwellpublishing.com/journal.asp?ref=0006-341X .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.