IDEAS home Printed from https://ideas.repec.org/a/bes/jnlasa/v99y2004p909-917.html
   My bibliography  Save this article

A Model-Based Background Adjustment for Oligonucleotide Expression Arrays

Author

Listed:
  • Zhijin Wu
  • Rafael A. Irizarry
  • Robert Gentleman
  • Francisco Martinez-Murillo
  • Forrest Spencer

Abstract

No abstract is available for this item.

Suggested Citation

  • Zhijin Wu & Rafael A. Irizarry & Robert Gentleman & Francisco Martinez-Murillo & Forrest Spencer, 2004. "A Model-Based Background Adjustment for Oligonucleotide Expression Arrays," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 909-917, December.
    • Handle: RePEc:bes:jnlasa:v:99:y:2004:p:909-917
    as

    Download full text from publisher

    File URL: http://www.ingentaconnect.com/content/asa/jasa/2004/00000099/00000468/art00001
    File Function: full text
    Download Restriction: Access to full text is restricted to subscribers.
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Nan Li & Matthew N. McCall & Zhijin Wu, 2017. "Establishing Informative Prior for Gene Expression Variance from Public Databases," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 9(1), pages 160-177, June.
    2. Jeremiah J Faith & Boris Hayete & Joshua T Thaden & Ilaria Mogno & Jamey Wierzbowski & Guillaume Cottarel & Simon Kasif & James J Collins & Timothy S Gardner, 2007. "Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles," PLOS Biology, Public Library of Science, vol. 5(1), pages 1-13, January.
    3. Russell D J Huby & Philip Glaves & Richard Jackson, 2014. "The Incidence of Sexually Dimorphic Gene Expression Varies Greatly between Tissues in the Rat," PLOS ONE, Public Library of Science, vol. 9(12), pages 1-19, December.
    4. Huixia Wang & Xuming He, 2008. "An Enhanced Quantile Approach for Assessing Differential Gene Expressions," Biometrics, The International Biometric Society, vol. 64(2), pages 449-457, June.
    5. Parker Hilary S. & Leek Jeffrey T., 2012. "The practical effect of batch on genomic prediction," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(3), pages 1-22, April.
    6. Krishanpal Anamika & Àkos Gyenis & Laetitia Poidevin & Olivier Poch & Làszlò Tora, 2012. "RNA Polymerase II Pausing Downstream of Core Histone Genes Is Different from Genes Producing Polyadenylated Transcripts," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-14, June.
    7. Rinku Sharma & Garima Singh & Sudeepto Bhattacharya & Ashutosh Singh, 2018. "Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress," PLOS ONE, Public Library of Science, vol. 13(9), pages 1-18, September.
    8. Akul Singhania & Hitasha Rupani & Nivenka Jayasekera & Simon Lumb & Paul Hales & Neil Gozzard & Donna E Davies & Christopher H Woelk & Peter H Howarth, 2017. "Altered Epithelial Gene Expression in Peripheral Airways of Severe Asthma," PLOS ONE, Public Library of Science, vol. 12(1), pages 1-16, January.
    9. Sigrun Helga Lund & Daniel Fannar Gudbjartsson & Thorunn Rafnar & Asgeir Sigurdsson & Sigurjon Axel Gudjonsson & Julius Gudmundsson & Kari Stefansson & Gunnar Stefansson, 2014. "A Method for Detecting Long Non-Coding RNAs with Tiled RNA Expression Microarrays," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-9, June.
    10. Marot Guillemette & Mayer Claus-Dieter, 2009. "Sequential Analysis for Microarray Data Based on Sensitivity and Meta-Analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-35, January.
    11. Suyan Tian & James G Krueger & Katherine Li & Ali Jabbari & Carrie Brodmerkel & Michelle A Lowes & Mayte Suárez-Fariñas, 2012. "Meta-Analysis Derived (MAD) Transcriptome of Psoriasis Defines the “Core” Pathogenesis of Disease," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-15, September.
    12. Wei-Chung Cheng & Cheng-Wei Chang & Chaang-Ray Chen & Min-Lung Tsai & Wun-Yi Shu & Chia-Yang Li & Ian C Hsu, 2011. "Identification of Reference Genes across Physiological States for qRT-PCR through Microarray Meta-Analysis," PLOS ONE, Public Library of Science, vol. 6(2), pages 1-8, February.
    13. Upton Graham J. G. & Harrison Andrew P, 2010. "The Detection of Blur in Affymetrix GeneChips," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-19, October.
    14. Jin-Xing Liu & Yong Xu & Chun-Hou Zheng & Yi Wang & Jing-Yu Yang, 2012. "Characteristic Gene Selection via Weighting Principal Components by Singular Values," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-10, July.
    15. Ryan Abo & Gregory D Jenkins & Liewei Wang & Brooke L Fridley, 2012. "Identifying the Genetic Variation of Gene Expression Using Gene Sets: Application of Novel Gene Set eQTL Approach to PharmGKB and KEGG," PLOS ONE, Public Library of Science, vol. 7(8), pages 1-11, August.
    16. Lei Zhang & Linlin Wang & Pu Tian & Suyan Tian, 2016. "Identification of Genes Discriminating Multiple Sclerosis Patients from Controls by Adapting a Pathway Analysis Method," PLOS ONE, Public Library of Science, vol. 11(11), pages 1-13, November.
    17. Chalise, Prabhakar & Fridley, Brooke L., 2012. "Comparison of penalty functions for sparse canonical correlation analysis," Computational Statistics & Data Analysis, Elsevier, vol. 56(2), pages 245-254.
    18. Erick da Conceição Amorim & Vinícius Diniz Mayrink, 2020. "Clustering non-linear interactions in factor analysis," METRON, Springer;Sapienza Università di Roma, vol. 78(3), pages 329-352, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bes:jnlasa:v:99:y:2004:p:909-917. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Christopher F. Baum (email available below). General contact details of provider: http://www.amstat.org/publications/jasa/index.cfm?fuseaction=main .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.