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Bayesian estimation of spatial filters with Moran's eigenvectors and hierarchical shrinkage priors

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  • Donegan, Connor
  • Chun, Yongwan
  • Hughes, Amy E.

Abstract

This paper proposes a Bayesian method for spatial regression using eigenvector spatial filtering (ESF) and Piironen and Vehtari's (2017) regularized horseshoe (RHS) prior. ESF models are most often estimated using variable selection procedures such as stepwise selection, but in the absence of a Bayesian model averaging procedure variable selection methods cannot properly account for parameter uncertainty. Hierarchical shrinkage priors such as the RHS address the foregoing concern in a computationally efficient manner by encoding prior information about spatial filters into an adaptive prior distribution which shrinks posterior estimates towards zero in the absence of a strong signal while only minimally regularizing coefficients of important eigenvectors. This paper presents results from a large simulation study which compares the performance of the proposed Bayesian model (RHS-ESF) to alternative spatial models under a variety of spatial autocorrelation scenarios. The RHS-ESF model performance matched that of the SAR model from which the data was generated. The study highlights that reliable uncertainty estimates require greater attention to spatial autocorrelation in covariates than is typically given. A demonstration analysis of 2016 U.S. Presidential election results further evidences robustness of results to hyper-prior specifications as well as the advantages of estimating spatial models using the Stan probabilistic programming language.

Suggested Citation

  • Donegan, Connor & Chun, Yongwan & Hughes, Amy E., 2020. "Bayesian estimation of spatial filters with Moran's eigenvectors and hierarchical shrinkage priors," OSF Preprints fah3z, Center for Open Science.
  • Handle: RePEc:osf:osfxxx:fah3z
    DOI: 10.31219/osf.io/fah3z
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    References listed on IDEAS

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    1. Yongwan Chun & Daniel A. Griffith & Monghyeon Lee & Parmanand Sinha, 2016. "Eigenvector selection with stepwise regression techniques to construct eigenvector spatial filters," Journal of Geographical Systems, Springer, vol. 18(1), pages 67-85, January.
    2. Carlos M. Carvalho & Nicholas G. Polson & James G. Scott, 2010. "The horseshoe estimator for sparse signals," Biometrika, Biometrika Trust, vol. 97(2), pages 465-480.
    3. Yongwan Chun, 2008. "Modeling network autocorrelation within migration flows by eigenvector spatial filtering," Journal of Geographical Systems, Springer, vol. 10(4), pages 317-344, December.
    4. Chris Chatfield, 1995. "Model Uncertainty, Data Mining and Statistical Inference," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 158(3), pages 419-444, May.
    5. R. Kelley Pace & James P. Lesage & Shuang Zhu, 2013. "Interpretation and Computation of Estimates from Regression Models using Spatial Filtering," Spatial Economic Analysis, Taylor & Francis Journals, vol. 8(3), pages 352-369, September.
    6. John Hughes & Murali Haran, 2013. "Dimension reduction and alleviation of confounding for spatial generalized linear mixed models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 75(1), pages 139-159, January.
    7. Brian J. Reich & James S. Hodges & Vesna Zadnik, 2006. "Effects of Residual Smoothing on the Posterior of the Fixed Effects in Disease-Mapping Models," Biometrics, The International Biometric Society, vol. 62(4), pages 1197-1206, December.
    8. Michael Tiefelsdorf & Daniel A Griffith, 2007. "Semiparametric Filtering of Spatial Autocorrelation: The Eigenvector Approach," Environment and Planning A, , vol. 39(5), pages 1193-1221, May.
    9. Hodges, James S. & Reich, Brian J., 2010. "Adding Spatially-Correlated Errors Can Mess Up the Fixed Effect You Love," The American Statistician, American Statistical Association, vol. 64(4), pages 325-334.
    10. Yongwan Chun & Daniel Griffith & Monghyeon Lee & Parmanand Sinha, 2016. "Eigenvector selection with stepwise regression techniques to construct eigenvector spatial filters," Journal of Geographical Systems, Springer, vol. 18(1), pages 67-85, January.
    11. Daisuke Murakami & Daniel Griffith, 2015. "Random effects specifications in eigenvector spatial filtering: a simulation study," Journal of Geographical Systems, Springer, vol. 17(4), pages 311-331, October.
    12. Manfred M. Fischer & Peter Nijkamp (ed.), 2014. "Handbook of Regional Science," Springer Books, Springer, edition 127, number 978-3-642-23430-9, December.
    13. Daniel A. Griffith, 2000. "A linear regression solution to the spatial autocorrelation problem," Journal of Geographical Systems, Springer, vol. 2(2), pages 141-156, July.
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    Cited by:

    1. Connor Donegan & Yongwan Chun & Daniel A. Griffith, 2021. "Modeling Community Health with Areal Data: Bayesian Inference with Survey Standard Errors and Spatial Structure," IJERPH, MDPI, vol. 18(13), pages 1-27, June.

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