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Model based clustering for mixed data: clustMD

Author

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  • Damien McParland

    (University College Dublin)

  • Isobel Claire Gormley

    (University College Dublin)

Abstract

A model based clustering procedure for data of mixed type, clustMD, is developed using a latent variable model. It is proposed that a latent variable, following a mixture of Gaussian distributions, generates the observed data of mixed type. The observed data may be any combination of continuous, binary, ordinal or nominal variables. clustMD employs a parsimonious covariance structure for the latent variables, leading to a suite of six clustering models that vary in complexity and provide an elegant and unified approach to clustering mixed data. An expectation maximisation (EM) algorithm is used to estimate clustMD; in the presence of nominal data a Monte Carlo EM algorithm is required. The clustMD model is illustrated by clustering simulated mixed type data and prostate cancer patients, on whom mixed data have been recorded.

Suggested Citation

  • Damien McParland & Isobel Claire Gormley, 2016. "Model based clustering for mixed data: clustMD," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 10(2), pages 155-169, June.
    • Handle: RePEc:spr:advdac:v:10:y:2016:i:2:d:10.1007_s11634-016-0238-x
    DOI: 10.1007/s11634-016-0238-x
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    References listed on IDEAS

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    Cited by:

    1. Felix Mbuga & Cristina Tortora, 2021. "Spectral Clustering of Mixed-Type Data," Stats, MDPI, vol. 5(1), pages 1-11, December.
    2. Christophe Biernacki & Matthieu Marbac & Vincent Vandewalle, 2021. "Gaussian-Based Visualization of Gaussian and Non-Gaussian-Based Clustering," Journal of Classification, Springer;The Classification Society, vol. 38(1), pages 129-157, April.
    3. Daniel Fernández & Richard Arnold & Shirley Pledger & Ivy Liu & Roy Costilla, 2019. "Finite mixture biclustering of discrete type multivariate data," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 13(1), pages 117-143, March.
    4. Selosse, Margot & Jacques, Julien & Biernacki, Christophe, 2020. "Model-based co-clustering for mixed type data," Computational Statistics & Data Analysis, Elsevier, vol. 144(C).
    5. Mantas Svazas & Valentinas Navickas & Yuriy Bilan & Joanna Nakonieczny & Jana Spankova, 2021. "Biomass Clusterization from a Regional Perspective: The Case of Lithuania," Energies, MDPI, vol. 14(21), pages 1-15, October.
    6. Keefe Murphy & Thomas Brendan Murphy, 2020. "Gaussian parsimonious clustering models with covariates and a noise component," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 14(2), pages 293-325, June.
    7. Christophe Biernacki & Alexandre Lourme, 2019. "Unifying data units and models in (co-)clustering," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 13(1), pages 7-31, March.

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