Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Species: Proof-of-Concept through Simulation in Grapevine
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0110436
Download full text from publisher
References listed on IDEAS
- Jiahua Chen & Zehua Chen, 2008. "Extended Bayesian information criteria for model selection with large model spaces," Biometrika, Biometrika Trust, vol. 95(3), pages 759-771.
- M. Moriondo & G. Jones & B. Bois & C. Dibari & R. Ferrise & G. Trombi & M. Bindi, 2013. "Projected shifts of wine regions in response to climate change," Climatic Change, Springer, vol. 119(3), pages 825-839, August.
- Park, Trevor & Casella, George, 2008. "The Bayesian Lasso," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 681-686, June.
- Sean Myles & Jer-Ming Chia & Bonnie Hurwitz & Charles Simon & Gan Yuan Zhong & Edward Buckler & Doreen Ware, 2010. "Rapid Genomic Characterization of the Genus Vitis," PLOS ONE, Public Library of Science, vol. 5(1), pages 1-9, January.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Ruggieri, Eric & Lawrence, Charles E., 2012. "On efficient calculations for Bayesian variable selection," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1319-1332.
- Daniel Felix Ahelegbey & Monica Billio & Roberto Casarin, 2016.
"Sparse Graphical Vector Autoregression: A Bayesian Approach,"
Annals of Economics and Statistics, GENES, issue 123-124, pages 333-361.
- Roberto Casarin & Daniel Felix Ahelegbey & Monica Billio, 2014. "Sparse Graphical Vector Autoregression: A Bayesian Approach," Working Papers 2014:29, Department of Economics, University of Venice "Ca' Foscari".
- Qifan Song & Guang Cheng, 2020. "Bayesian Fusion Estimation via t Shrinkage," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 82(2), pages 353-385, August.
- Park, Jaewoo & Jin, Ick Hoon & Schweinberger, Michael, 2022. "Bayesian model selection for high-dimensional Ising models, with applications to educational data," Computational Statistics & Data Analysis, Elsevier, vol. 165(C).
- Dimitris Korobilis & Kenichi Shimizu, 2022.
"Bayesian Approaches to Shrinkage and Sparse Estimation,"
Foundations and Trends(R) in Econometrics, now publishers, vol. 11(4), pages 230-354, June.
- Korobilis, Dimitris & Shimizu, Kenichi, 2021. "Bayesian Approaches to Shrinkage and Sparse Estimation," MPRA Paper 111631, University Library of Munich, Germany.
- Dimitris Korobilis & Kenichi Shimizu, 2022. "Bayesian Approaches to Shrinkage and Sparse Estimation," Working Paper series 22-02, Rimini Centre for Economic Analysis.
- Dimitris Korobilis & Kenichi Shimizu, 2021. "Bayesian Approaches to Shrinkage and Sparse Estimation," Papers 2112.11751, arXiv.org.
- Dimitris Korobilis & Kenichi Shimizu, 2021. "Bayesian Approaches to Shrinkage and Sparse Estimation," Working Papers 2021_19, Business School - Economics, University of Glasgow.
- Hamed Haselimashhadi & Veronica Vinciotti, 2018. "Penalised inference for lagged dependent regression in the presence of autocorrelated residuals," METRON, Springer;Sapienza Università di Roma, vol. 76(1), pages 49-68, April.
- Wei Sun & Lexin Li, 2012. "Multiple Loci Mapping via Model-free Variable Selection," Biometrics, The International Biometric Society, vol. 68(1), pages 12-22, March.
- M. Marsman & K. Huth & L. J. Waldorp & I. Ntzoufras, 2022. "Objective Bayesian Edge Screening and Structure Selection for Ising Networks," Psychometrika, Springer;The Psychometric Society, vol. 87(1), pages 47-82, March.
- Li, Chunyu & Lou, Chenxin & Luo, Dan & Xing, Kai, 2021. "Chinese corporate distress prediction using LASSO: The role of earnings management," International Review of Financial Analysis, Elsevier, vol. 76(C).
- D. Santillán & L. Garrote & A. Iglesias & V. Sotes, 2020. "Climate change risks and adaptation: new indicators for Mediterranean viticulture," Mitigation and Adaptation Strategies for Global Change, Springer, vol. 25(5), pages 881-899, May.
- Armagan, Artin & Dunson, David, 2011. "Sparse variational analysis of linear mixed models for large data sets," Statistics & Probability Letters, Elsevier, vol. 81(8), pages 1056-1062, August.
- Frommlet, Florian & Ruhaltinger, Felix & Twaróg, Piotr & Bogdan, Małgorzata, 2012. "Modified versions of Bayesian Information Criterion for genome-wide association studies," Computational Statistics & Data Analysis, Elsevier, vol. 56(5), pages 1038-1051.
- Zak-Szatkowska, Malgorzata & Bogdan, Malgorzata, 2011. "Modified versions of the Bayesian Information Criterion for sparse Generalized Linear Models," Computational Statistics & Data Analysis, Elsevier, vol. 55(11), pages 2908-2924, November.
- Martin Feldkircher & Florian Huber & Gary Koop & Michael Pfarrhofer, 2022.
"APPROXIMATE BAYESIAN INFERENCE AND FORECASTING IN HUGE‐DIMENSIONAL MULTICOUNTRY VARs,"
International Economic Review, Department of Economics, University of Pennsylvania and Osaka University Institute of Social and Economic Research Association, vol. 63(4), pages 1625-1658, November.
- Martin Feldkircher & Florian Huber & Gary Koop & Michael Pfarrhofer, 2021. "Approximate Bayesian inference and forecasting in huge-dimensional multi-country VARs," Papers 2103.04944, arXiv.org, revised Feb 2022.
- Eliaz, Kfir & Spiegler, Ran, 2022.
"On incentive-compatible estimators,"
Games and Economic Behavior, Elsevier, vol. 132(C), pages 204-220.
- Eliaz, Kfir & Spiegler, Ran, 2018. "Incentive Compatible Estimators," CEPR Discussion Papers 12804, C.E.P.R. Discussion Papers.
- Xiaotong Shen & Wei Pan & Yunzhang Zhu & Hui Zhou, 2013. "On constrained and regularized high-dimensional regression," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 65(5), pages 807-832, October.
- Oguzhan Cepni & I. Ethem Guney & Norman R. Swanson, 2020. "Forecasting and nowcasting emerging market GDP growth rates: The role of latent global economic policy uncertainty and macroeconomic data surprise factors," Journal of Forecasting, John Wiley & Sons, Ltd., vol. 39(1), pages 18-36, January.
- Shan Luo & Zehua Chen, 2014. "Sequential Lasso Cum EBIC for Feature Selection With Ultra-High Dimensional Feature Space," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1229-1240, September.
- Lu Tang & Ling Zhou & Peter X. K. Song, 2019. "Fusion learning algorithm to combine partially heterogeneous Cox models," Computational Statistics, Springer, vol. 34(1), pages 395-414, March.
- Molly C. Klanderman & Kathryn B. Newhart & Tzahi Y. Cath & Amanda S. Hering, 2020. "Fault isolation for a complex decentralized waste water treatment facility," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 69(4), pages 931-951, August.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0110436. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.