IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0009361.html
   My bibliography  Save this article

Identifying Prototypical Components in Behaviour Using Clustering Algorithms

Author

Listed:
  • Elke Braun
  • Bart Geurten
  • Martin Egelhaaf

Abstract

Quantitative analysis of animal behaviour is a requirement to understand the task solving strategies of animals and the underlying control mechanisms. The identification of repeatedly occurring behavioural components is thereby a key element of a structured quantitative description. However, the complexity of most behaviours makes the identification of such behavioural components a challenging problem. We propose an automatic and objective approach for determining and evaluating prototypical behavioural components. Behavioural prototypes are identified using clustering algorithms and finally evaluated with respect to their ability to represent the whole behavioural data set. The prototypes allow for a meaningful segmentation of behavioural sequences. We applied our clustering approach to identify prototypical movements of the head of blowflies during cruising flight. The results confirm the previously established saccadic gaze strategy by the set of prototypes being divided into either predominantly translational or rotational movements, respectively. The prototypes reveal additional details about the saccadic and intersaccadic flight sections that could not be unravelled so far. Successful application of the proposed approach to behavioural data shows its ability to automatically identify prototypical behavioural components within a large and noisy database and to evaluate these with respect to their quality and stability. Hence, this approach might be applied to a broad range of behavioural and neural data obtained from different animals and in different contexts.

Suggested Citation

  • Elke Braun & Bart Geurten & Martin Egelhaaf, 2010. "Identifying Prototypical Components in Behaviour Using Clustering Algorithms," PLOS ONE, Public Library of Science, vol. 5(2), pages 1-15, February.
  • Handle: RePEc:plo:pone00:0009361
    DOI: 10.1371/journal.pone.0009361
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0009361
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0009361&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0009361?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Greg J Stephens & Bethany Johnson-Kerner & William Bialek & William S Ryu, 2008. "Dimensionality and Dynamics in the Behavior of C. elegans," PLOS Computational Biology, Public Library of Science, vol. 4(4), pages 1-10, April.
    2. Zoubin Ghahramani, 2000. "Building blocks of movement," Nature, Nature, vol. 407(6805), pages 682-683, October.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Olivier J N Bertrand & Jens P Lindemann & Martin Egelhaaf, 2015. "A Bio-inspired Collision Avoidance Model Based on Spatial Information Derived from Motion Detectors Leads to Common Routes," PLOS Computational Biology, Public Library of Science, vol. 11(11), pages 1-28, November.
    2. Andrea Censi & Andrew D Straw & Rosalyn W Sayaman & Richard M Murray & Michael H Dickinson, 2013. "Discriminating External and Internal Causes for Heading Changes in Freely Flying Drosophila," PLOS Computational Biology, Public Library of Science, vol. 9(2), pages 1-14, February.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Stanislav Nagy & Marc Goessling & Yali Amit & David Biron, 2015. "A Generative Statistical Algorithm for Automatic Detection of Complex Postures," PLOS Computational Biology, Public Library of Science, vol. 11(10), pages 1-23, October.
    2. Christophe Restif & Carolina Ibáñez-Ventoso & Mehul M Vora & Suzhen Guo & Dimitris Metaxas & Monica Driscoll, 2014. "CeleST: Computer Vision Software for Quantitative Analysis of C. elegans Swim Behavior Reveals Novel Features of Locomotion," PLOS Computational Biology, Public Library of Science, vol. 10(7), pages 1-12, July.
    3. Chang Woo Ji & Young-Seuk Park & Yongde Cui & Hongzhu Wang & Ihn-Sil Kwak & Tae-Soo Chon, 2020. "Analyzing the Response Behavior of Lumbriculus variegatus (Oligochaeta: Lumbriculidae) to Different Concentrations of Copper Sulfate Based on Line Body Shape Detection and a Recurrent Self-Organizing ," IJERPH, MDPI, vol. 17(8), pages 1-15, April.
    4. Markus Reischl & Mazin Jouda & Neil MacKinnon & Erwin Fuhrer & Natalia Bakhtina & Andreas Bartschat & Ralf Mikut & Jan G Korvink, 2019. "Motion prediction enables simulated MR-imaging of freely moving model organisms," PLOS Computational Biology, Public Library of Science, vol. 15(12), pages 1-16, December.
    5. Sepideh Bazazi & Frederic Bartumeus & Joseph J Hale & Iain D Couzin, 2012. "Intermittent Motion in Desert Locusts: Behavioural Complexity in Simple Environments," PLOS Computational Biology, Public Library of Science, vol. 8(5), pages 1-10, May.
    6. Steffen Werner & Jochen C Rink & Ingmar H Riedel-Kruse & Benjamin M Friedrich, 2014. "Shape Mode Analysis Exposes Movement Patterns in Biology: Flagella and Flatworms as Case Studies," PLOS ONE, Public Library of Science, vol. 9(11), pages 1-21, November.
    7. Chongbin Zheng & Evelyn Tang, 2024. "A topological mechanism for robust and efficient global oscillations in biological networks," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    8. Jeffrey P Nguyen & Ashley N Linder & George S Plummer & Joshua W Shaevitz & Andrew M Leifer, 2017. "Automatically tracking neurons in a moving and deforming brain," PLOS Computational Biology, Public Library of Science, vol. 13(5), pages 1-19, May.
    9. Laetitia Hebert & Tosif Ahamed & Antonio C Costa & Liam O’Shaughnessy & Greg J Stephens, 2021. "WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans," PLOS Computational Biology, Public Library of Science, vol. 17(4), pages 1-20, April.
    10. Li-Chun Lin & Han-Sheng Chuang, 2017. "Analyzing the locomotory gaitprint of Caenorhabditis elegans on the basis of empirical mode decomposition," PLOS ONE, Public Library of Science, vol. 12(7), pages 1-14, July.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0009361. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.