Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pgen.1008766
Download full text from publisher
References listed on IDEAS
- Xiang Zhou & Peter Carbonetto & Matthew Stephens, 2013. "Polygenic Modeling with Bayesian Sparse Linear Mixed Models," PLOS Genetics, Public Library of Science, vol. 9(2), pages 1-14, February.
- Teri A. Manolio & Francis S. Collins & Nancy J. Cox & David B. Goldstein & Lucia A. Hindorff & David J. Hunter & Mark I. McCarthy & Erin M. Ramos & Lon R. Cardon & Aravinda Chakravarti & Judy H. Cho &, 2009. "Finding the missing heritability of complex diseases," Nature, Nature, vol. 461(7265), pages 747-753, October.
- Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
- Lukas Meier & Sara Van De Geer & Peter Bühlmann, 2008. "The group lasso for logistic regression," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 53-71, February.
- Jakris Eu-ahsunthornwattana & E Nancy Miller & Michaela Fakiola & Wellcome Trust Case Control Consortium 2 & Selma M B Jeronimo & Jenefer M Blackwell & Heather J Cordell, 2014. "Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data," PLOS Genetics, Public Library of Science, vol. 10(7), pages 1-20, July.
- Howard D. Bondell & Arun Krishna & Sujit K. Ghosh, 2010. "Joint Variable Selection for Fixed and Random Effects in Linear Mixed-Effects Models," Biometrics, The International Biometric Society, vol. 66(4), pages 1069-1077, December.
- Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
- Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
- repec:jss:jstsof:33:i01 is not listed on IDEAS
- Osamu Komori & Shinto Eguchi & John B. Copas, 2015. "Generalized t-statistic for two-group classification," Biometrics, The International Biometric Society, vol. 71(2), pages 404-416, June.
- Simona Buscemi & Antonella Plaia, 2020. "Model selection in linear mixed-effect models," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 104(4), pages 529-575, December.
- Yang, Yanlin & Hu, Xuemei & Jiang, Huifeng, 2022. "Group penalized logistic regressions predict up and down trends for stock prices," The North American Journal of Economics and Finance, Elsevier, vol. 59(C).
- Mojtaba Ganjali & Taban Baghfalaki, 2018. "Application of Penalized Mixed Model in Identification of Genes in Yeast Cell-Cycle Gene Expression Data," Biostatistics and Biometrics Open Access Journal, Juniper Publishers Inc., vol. 6(2), pages 38-41, April.
- Yuan Jiang & Yunxiao He & Heping Zhang, 2016. "Variable Selection With Prior Information for Generalized Linear Models via the Prior LASSO Method," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(513), pages 355-376, March.
- Zanhua Yin, 2020. "Variable selection for sparse logistic regression," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 83(7), pages 821-836, October.
- Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
- Yanfang Zhang & Chuanhua Wei & Xiaolin Liu, 2022. "Group Logistic Regression Models with l p,q Regularization," Mathematics, MDPI, vol. 10(13), pages 1-15, June.
- Young Joo Yoon & Cheolwoo Park & Erik Hofmeister & Sangwook Kang, 2012. "Group variable selection in cardiopulmonary cerebral resuscitation data for veterinary patients," Journal of Applied Statistics, Taylor & Francis Journals, vol. 39(7), pages 1605-1621, January.
- Xiaoping Liu & Xiao-Bai Li & Sumit Sarkar, 2023. "Cost-Restricted Feature Selection for Data Acquisition," Management Science, INFORMS, vol. 69(7), pages 3976-3992, July.
- Haibin Zhang & Juan Wei & Meixia Li & Jie Zhou & Miantao Chao, 2014. "On proximal gradient method for the convex problems regularized with the group reproducing kernel norm," Journal of Global Optimization, Springer, vol. 58(1), pages 169-188, January.
- Zhang, Yan-Qing & Tian, Guo-Liang & Tang, Nian-Sheng, 2016. "Latent variable selection in structural equation models," Journal of Multivariate Analysis, Elsevier, vol. 152(C), pages 190-205.
- Chen, Ya & Tsionas, Mike G. & Zelenyuk, Valentin, 2021. "LASSO+DEA for small and big wide data," Omega, Elsevier, vol. 102(C).
- Matthew Hindman, 2015. "Building Better Models," The ANNALS of the American Academy of Political and Social Science, , vol. 659(1), pages 48-62, May.
- McMahan Christopher & Baurley James & Bridges William & Joyner Chase & Kacamarga Muhamad Fitra & Lund Robert & Pardamean Carissa & Pardamean Bens, 2017. "A Bayesian hierarchical model for identifying significant polygenic effects while controlling for confounding and repeated measures," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 16(5-6), pages 407-419, December.
- Ya Chen & Mike Tsionas & Valentin Zelenyuk, 2020.
"LASSO DEA for small and big data,"
CEPA Working Papers Series
WP092020, School of Economics, University of Queensland, Australia.
- Ya Chen & Mike Tsionas & Valentin Zelenyuk, 2020. "LASSO DEA for small and big data," CEPA Working Papers Series WP022020, School of Economics, University of Queensland, Australia.
- Hendrik van der Wurp & Andreas Groll, 2023. "Introducing LASSO-type penalisation to generalised joint regression modelling for count data," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 107(1), pages 127-151, March.
- Yang, Yiping & Luo, Chuanqin & Yang, Weiming, 2024. "Double penalized variable selection for high-dimensional partial linear mixed effects models," Journal of Multivariate Analysis, Elsevier, vol. 204(C).
- Diego Vidaurre & Concha Bielza & Pedro Larrañaga, 2013. "A Survey of L1 Regression," International Statistical Review, International Statistical Institute, vol. 81(3), pages 361-387, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pgen00:1008766. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosgenetics (email available below). General contact details of provider: https://journals.plos.org/plosgenetics/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.