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Evaluation of Candidate Stromal Epithelial Cross-Talk Genes Identifies Association between Risk of Serous Ovarian Cancer and TERT, a Cancer Susceptibility “Hot-Spot”

Author

Listed:
  • Sharon E Johnatty
  • Jonathan Beesley
  • Xiaoqing Chen
  • Stuart Macgregor
  • David L Duffy
  • Amanda B Spurdle
  • Anna deFazio
  • Natalie Gava
  • Penelope M Webb
  • Australian Ovarian Cancer Study Group
  • Australian Cancer Study (Ovarian Cancer)
  • Mary Anne Rossing
  • Jennifer Anne Doherty
  • Marc T Goodman
  • Galina Lurie
  • Pamela J Thompson
  • Lynne R Wilkens
  • Roberta B Ness
  • Kirsten B Moysich
  • Jenny Chang-Claude
  • Shan Wang-Gohrke
  • Daniel W Cramer
  • Kathryn L Terry
  • Susan E Hankinson
  • Shelley S Tworoger
  • Montserrat Garcia-Closas
  • Hannah Yang
  • Jolanta Lissowska
  • Stephen J Chanock
  • Paul D Pharoah
  • Honglin Song
  • Alice S Whitemore
  • Celeste L Pearce
  • Daniel O Stram
  • Anna H Wu
  • Malcolm C Pike
  • Simon A Gayther
  • Susan J Ramus
  • Usha Menon
  • Aleksandra Gentry-Maharaj
  • Hoda Anton-Culver
  • Argyrios Ziogas
  • Estrid Hogdall
  • Susanne K Kjaer
  • Claus Hogdall
  • Andrew Berchuck
  • Joellen M Schildkraut
  • Edwin S Iversen
  • Patricia G Moorman
  • Catherine M Phelan
  • Thomas A Sellers
  • Julie M Cunningham
  • Robert A Vierkant
  • David N Rider
  • Ellen L Goode
  • Izhak Haviv
  • Georgia Chenevix-Trench
  • Ovarian Cancer Association Consortium

Abstract

We hypothesized that variants in genes expressed as a consequence of interactions between ovarian cancer cells and the host micro-environment could contribute to cancer susceptibility. We therefore used a two-stage approach to evaluate common single nucleotide polymorphisms (SNPs) in 173 genes involved in stromal epithelial interactions in the Ovarian Cancer Association Consortium (OCAC). In the discovery stage, cases with epithelial ovarian cancer (n = 675) and controls (n = 1,162) were genotyped at 1,536 SNPs using an Illumina GoldenGate assay. Based on Positive Predictive Value estimates, three SNPs—PODXL rs1013368, ITGA6 rs13027811, and MMP3 rs522616—were selected for replication using TaqMan genotyping in up to 3,059 serous invasive cases and 8,905 controls from 16 OCAC case-control studies. An additional 18 SNPs with Pper-allele

Suggested Citation

  • Sharon E Johnatty & Jonathan Beesley & Xiaoqing Chen & Stuart Macgregor & David L Duffy & Amanda B Spurdle & Anna deFazio & Natalie Gava & Penelope M Webb & Australian Ovarian Cancer Study Group & Aus, 2010. "Evaluation of Candidate Stromal Epithelial Cross-Talk Genes Identifies Association between Risk of Serous Ovarian Cancer and TERT, a Cancer Susceptibility “Hot-Spot”," PLOS Genetics, Public Library of Science, vol. 6(7), pages 1-10, July.
    • Handle: RePEc:plo:pgen00:1001016
    DOI: 10.1371/journal.pgen.1001016
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    References listed on IDEAS

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    1. Douglas F. Easton & Karen A. Pooley & Alison M. Dunning & Paul D. P. Pharoah & Deborah Thompson & Dennis G. Ballinger & Jeffery P. Struewing & Jonathan Morrison & Helen Field & Robert Luben & Nicholas, 2007. "Genome-wide association study identifies novel breast cancer susceptibility loci," Nature, Nature, vol. 447(7148), pages 1087-1093, June.
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    Cited by:

    1. Jonathan Beesley & Hilda A Pickett & Sharon E Johnatty & Alison M Dunning & Xiaoqing Chen & Jun Li & Kyriaki Michailidou & Yi Lu & David N Rider & Rachel T Palmieri & Michael D Stutz & Diether Lambrec, 2011. "Functional Polymorphisms in the TERT Promoter Are Associated with Risk of Serous Epithelial Ovarian and Breast Cancers," PLOS ONE, Public Library of Science, vol. 6(9), pages 1-6, September.

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