Detailed Simulations of Cell Biology with Smoldyn 2.1
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DOI: 10.1371/journal.pcbi.1000705
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References listed on IDEAS
- Alejandro Colman-Lerner & Andrew Gordon & Eduard Serra & Tina Chin & Orna Resnekov & Drew Endy & C. Gustavo Pesce & Roger Brent, 2005. "Regulated cell-to-cell variation in a cell-fate decision system," Nature, Nature, vol. 437(7059), pages 699-706, September.
- Naama Barkai & Mark D. Rose & Ned S. Wingreen, 1998. "Protease helps yeast find mating partners," Nature, Nature, vol. 396(6710), pages 422-423, December.
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Cited by:
- Johannes Schöneberg & Frank Noé, 2013. "ReaDDy - A Software for Particle-Based Reaction-Diffusion Dynamics in Crowded Cellular Environments," PLOS ONE, Public Library of Science, vol. 8(9), pages 1-14, September.
- James C Schaff & Fei Gao & Ye Li & Igor L Novak & Boris M Slepchenko, 2016. "Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology," PLOS Computational Biology, Public Library of Science, vol. 12(12), pages 1-23, December.
- Brian Drawert & Andreas Hellander & Ben Bales & Debjani Banerjee & Giovanni Bellesia & Bernie J Daigle Jr. & Geoffrey Douglas & Mengyuan Gu & Anand Gupta & Stefan Hellander & Chris Horuk & Dibyendu Na, 2016. "Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist," PLOS Computational Biology, Public Library of Science, vol. 12(12), pages 1-15, December.
- Rory M Donovan & Jose-Juan Tapia & Devin P Sullivan & James R Faeder & Robert F Murphy & Markus Dittrich & Daniel M Zuckerman, 2016. "Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories," PLOS Computational Biology, Public Library of Science, vol. 12(2), pages 1-25, February.
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