Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.0040022
Download full text from publisher
References listed on IDEAS
- Lee, Jae Won & Lee, Jung Bok & Park, Mira & Song, Seuck Heun, 2005. "An extensive comparison of recent classification tools applied to microarray data," Computational Statistics & Data Analysis, Elsevier, vol. 48(4), pages 869-885, April.
- Tibshirani Robert J. & Efron Brad, 2002. "Pre-validation and inference in microarrays," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 1(1), pages 1-20, August.
- Andrea H. Bild & Guang Yao & Jeffrey T. Chang & Quanli Wang & Anil Potti & Dawn Chasse & Mary-Beth Joshi & David Harpole & Johnathan M. Lancaster & Andrew Berchuck & John A. Olson & Jeffrey R. Marks &, 2006. "Oncogenic pathway signatures in human cancers as a guide to targeted therapies," Nature, Nature, vol. 439(7074), pages 353-357, January.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Frénay, Benoît & Doquire, Gauthier & Verleysen, Michel, 2014. "Estimating mutual information for feature selection in the presence of label noise," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 832-848.
- Junjie Su & Byung-Jun Yoon & Edward R Dougherty, 2009. "Accurate and Reliable Cancer Classification Based on Probabilistic Inference of Pathway Activity," PLOS ONE, Public Library of Science, vol. 4(12), pages 1-10, December.
- Carey K Anders & Chaitanya R Acharya & David S Hsu & Gloria Broadwater & Katherine Garman & John A Foekens & Yi Zhang & Yixin Wang & Kelly Marcom & Jeffrey R Marks & Sayan Mukherjee & Joseph R Nevins , 2008. "Age-Specific Differences in Oncogenic Pathway Deregulation Seen in Human Breast Tumors," PLOS ONE, Public Library of Science, vol. 3(1), pages 1-8, January.
- Lida Qiu & Deyong Kang & Chuan Wang & Wenhui Guo & Fangmeng Fu & Qingxiang Wu & Gangqin Xi & Jiajia He & Liqin Zheng & Qingyuan Zhang & Xiaoxia Liao & Lianhuang Li & Jianxin Chen & Haohua Tu, 2022. "Intratumor graph neural network recovers hidden prognostic value of multi-biomarker spatial heterogeneity," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- David Lindgren & Gottfrid Sjödahl & Martin Lauss & Johan Staaf & Gunilla Chebil & Kristina Lövgren & Sigurdur Gudjonsson & Fredrik Liedberg & Oliver Patschan & Wiking Månsson & Mårten Fernö & Mattias , 2012. "Integrated Genomic and Gene Expression Profiling Identifies Two Major Genomic Circuits in Urothelial Carcinoma," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-11, June.
- Herbert Pang & Tiejun Tong & Hongyu Zhao, 2009. "Shrinkage-based Diagonal Discriminant Analysis and Its Applications in High-Dimensional Data," Biometrics, The International Biometric Society, vol. 65(4), pages 1021-1029, December.
- Lambert-Lacroix, Sophie & Peyre, Julie, 2006. "Local likelihood regression in generalized linear single-index models with applications to microarray data," Computational Statistics & Data Analysis, Elsevier, vol. 51(3), pages 2091-2113, December.
- Hu, Jianwei & Chai, Hao, 2013. "Adjusted regularized estimation in the accelerated failure time model with high dimensional covariates," Journal of Multivariate Analysis, Elsevier, vol. 122(C), pages 96-114.
- Jong Victor L. & Novianti Putri W. & Roes Kit C.B. & Eijkemans Marinus J.C., 2014. "Exploring homogeneity of correlation structures of gene expression datasets within and between etiological disease categories," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(6), pages 717-732, December.
- Yang, Tae Young, 2009. "Efficient multi-class cancer diagnosis algorithm, using a global similarity pattern," Computational Statistics & Data Analysis, Elsevier, vol. 53(3), pages 756-765, January.
- Peter Langfelder & Paul S Mischel & Steve Horvath, 2013. "When Is Hub Gene Selection Better than Standard Meta-Analysis?," PLOS ONE, Public Library of Science, vol. 8(4), pages 1-16, April.
- Ilya Kupershmidt & Qiaojuan Jane Su & Anoop Grewal & Suman Sundaresh & Inbal Halperin & James Flynn & Mamatha Shekar & Helen Wang & Jenny Park & Wenwu Cui & Gregory D Wall & Robert Wisotzkey & Satnam , 2010. "Ontology-Based Meta-Analysis of Global Collections of High-Throughput Public Data," PLOS ONE, Public Library of Science, vol. 5(9), pages 1-13, September.
- Kuang Du & Shiyou Wei & Zhi Wei & Dennie T. Frederick & Benchun Miao & Tabea Moll & Tian Tian & Eric Sugarman & Dmitry I. Gabrilovich & Ryan J. Sullivan & Lunxu Liu & Keith T. Flaherty & Genevieve M. , 2021. "Pathway signatures derived from on-treatment tumor specimens predict response to anti-PD1 blockade in metastatic melanoma," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
- Ruoqi Peng & Sriram Sridhar & Gaurav Tyagi & Jonathan E Phillips & Rosario Garrido & Paul Harris & Lisa Burns & Lorena Renteria & John Woods & Leena Chen & John Allard & Palanikumar Ravindran & Hans B, 2013. "Bleomycin Induces Molecular Changes Directly Relevant to Idiopathic Pulmonary Fibrosis: A Model for “Active” Disease," PLOS ONE, Public Library of Science, vol. 8(4), pages 1-15, April.
- Mohammad S. Uddin & Guotai Chi & Mazin A. M. Al Janabi & Tabassum Habib, 2022. "Leveraging random forest in micro‐enterprises credit risk modelling for accuracy and interpretability," International Journal of Finance & Economics, John Wiley & Sons, Ltd., vol. 27(3), pages 3713-3729, July.
- Balázs Győrffy & Pawel Surowiak & Jan Budczies & András Lánczky, 2013. "Online Survival Analysis Software to Assess the Prognostic Value of Biomarkers Using Transcriptomic Data in Non-Small-Cell Lung Cancer," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-8, December.
- Scrucca, Luca, 2007. "Class prediction and gene selection for DNA microarrays using regularized sliced inverse regression," Computational Statistics & Data Analysis, Elsevier, vol. 52(1), pages 438-451, September.
- Lama, Nicola & Boracchi, Patrizia & Biganzoli, Elia, 2009. "Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data," Computational Statistics & Data Analysis, Elsevier, vol. 53(5), pages 1906-1922, March.
- Mariëlle I Gallegos Ruiz & Karijn Floor & Paul Roepman & José A Rodriguez & Gerrit A Meijer & Wolter J Mooi & Ewa Jassem & Jacek Niklinski & Thomas Muley & Nico van Zandwijk & Egbert F Smit & Kristin , 2008. "Integration of Gene Dosage and Gene Expression in Non-Small Cell Lung Cancer, Identification of HSP90 as Potential Target," PLOS ONE, Public Library of Science, vol. 3(3), pages 1-8, March.
- Ju Han Kim, 2012. "Chapter 8: Biological Knowledge Assembly and Interpretation," PLOS Computational Biology, Public Library of Science, vol. 8(12), pages 1-12, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:0040022. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.