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Practical Strategies for Discovering Regulatory DNA Sequence Motifs

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  • Kenzie D MacIsaac
  • Ernest Fraenkel

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  • Kenzie D MacIsaac & Ernest Fraenkel, 2006. "Practical Strategies for Discovering Regulatory DNA Sequence Motifs," PLOS Computational Biology, Public Library of Science, vol. 2(4), pages 1-10, April.
    • Handle: RePEc:plo:pcbi00:0020036
    DOI: 10.1371/journal.pcbi.0020036
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    References listed on IDEAS

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    1. Rahul Siddharthan & Eric D Siggia & Erik van Nimwegen, 2005. "PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny," PLOS Computational Biology, Public Library of Science, vol. 1(7), pages 1-23, December.
    2. Christopher T. Harbison & D. Benjamin Gordon & Tong Ihn Lee & Nicola J. Rinaldi & Kenzie D. Macisaac & Timothy W. Danford & Nancy M. Hannett & Jean-Bosco Tagne & David B. Reynolds & Jane Yoo & Ezra G., 2004. "Transcriptional regulatory code of a eukaryotic genome," Nature, Nature, vol. 431(7004), pages 99-104, September.
    3. Manolis Kellis & Nick Patterson & Matthew Endrizzi & Bruce Birren & Eric S. Lander, 2003. "Sequencing and comparison of yeast species to identify genes and regulatory elements," Nature, Nature, vol. 423(6937), pages 241-254, May.
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    Cited by:

    1. Harri Lähdesmäki & Alistair G Rust & Ilya Shmulevich, 2008. "Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources," PLOS ONE, Public Library of Science, vol. 3(3), pages 1-24, March.
    2. Yuan Yuan & Lei Guo & Lei Shen & Jun S Liu, 2007. "Predicting Gene Expression from Sequence: A Reexamination," PLOS Computational Biology, Public Library of Science, vol. 3(11), pages 1-7, November.
    3. Fran Lewitter, 2007. "Moving Education Forward," PLOS Computational Biology, Public Library of Science, vol. 3(1), pages 1-2, January.
    4. Naomi Habib & Tommy Kaplan & Hanah Margalit & Nir Friedman, 2008. "A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval," PLOS Computational Biology, Public Library of Science, vol. 4(2), pages 1-16, February.
    5. Luis Carvalho, 2013. "Bayesian Centroid Estimation for Motif Discovery," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-12, December.
    6. Ana Helena Tavares & Jakob Raymaekers & Peter J. Rousseeuw & Paula Brito & Vera Afreixo, 2020. "Clustering genomic words in human DNA using peaks and trends of distributions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 14(1), pages 57-76, March.

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