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On the marginal likelihood and cross-validation

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  • E Fong
  • C C Holmes

Abstract

SummaryIn Bayesian statistics, the marginal likelihood, also known as the evidence, is used to evaluate model fit as it quantifies the joint probability of the data under the prior. In contrast, non-Bayesian models are typically compared using cross-validation on held-out data, either through $k$-fold partitioning or leave-$p$-out subsampling. We show that the marginal likelihood is formally equivalent to exhaustive leave-$p$-out crossvalidation averaged over all values of $p$ and all held-out test sets when using the log posterior predictive probability as the scoring rule. Moreover, the log posterior predictive score is the only coherent scoring rule under data exchangeability. This offers new insight into the marginal likelihood and cross-validation, and highlights the potential sensitivity of the marginal likelihood to the choice of the prior. We suggest an alternative approach using cumulative cross-validation following a preparatory training phase. Our work has connections to prequential analysis and intrinsic Bayes factors, but is motivated in a different way.

Suggested Citation

  • E Fong & C C Holmes, 2020. "On the marginal likelihood and cross-validation," Biometrika, Biometrika Trust, vol. 107(2), pages 489-496.
  • Handle: RePEc:oup:biomet:v:107:y:2020:i:2:p:489-496.
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    File URL: http://hdl.handle.net/10.1093/biomet/asz077
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    Cited by:

    1. Dyrland, Kjetil & Lundervold, Alexander Selvikvåg & Porta Mana, PierGianLuca, 2022. "A probability transducer and decision-theoretic augmentation for machine-learning classifiers," OSF Preprints vct9y, Center for Open Science.
    2. Tsionas, Mike & Parmeter, Christopher F. & Zelenyuk, Valentin, 2023. "Bayesian Artificial Neural Networks for frontier efficiency analysis," Journal of Econometrics, Elsevier, vol. 236(2).
    3. Emre Demirkaya & Yang Feng & Pallavi Basu & Jinchi Lv, 2022. "Large-scale model selection in misspecified generalized linear models [Information theory and an extension of the maximum likelihood principle]," Biometrika, Biometrika Trust, vol. 109(1), pages 123-136.
    4. Tsionas, Mike G., 2023. "Combining data envelopment analysis and stochastic frontiers via a LASSO prior," European Journal of Operational Research, Elsevier, vol. 304(3), pages 1158-1166.
    5. Tsionas, Mike G., 2023. "Bayesian learning in performance. Is there any?," European Journal of Operational Research, Elsevier, vol. 311(1), pages 263-282.
    6. Mike Tsionas & Christopher F. Parmeter & Valentin Zelenyuk, 2021. "Bridging the Divide? Bayesian Artificial Neural Networks for Frontier Efficiency Analysis," CEPA Working Papers Series WP082021, School of Economics, University of Queensland, Australia.
    7. Cyril Bachelard & Apostolos Chalkis & Vissarion Fisikopoulos & Elias Tsigaridas, 2023. "Randomized geometric tools for anomaly detection in stock markets," Post-Print hal-04223511, HAL.
    8. Marrel, Amandine & Iooss, Bertrand, 2024. "Probabilistic surrogate modeling by Gaussian process: A review on recent insights in estimation and validation," Reliability Engineering and System Safety, Elsevier, vol. 247(C).
    9. He A Xu & Alireza Modirshanechi & Marco P Lehmann & Wulfram Gerstner & Michael H Herzog, 2021. "Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making," PLOS Computational Biology, Public Library of Science, vol. 17(6), pages 1-32, June.

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