Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
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DOI: 10.1038/nature06745
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Cited by:
- Nanshan, Muye & Zhang, Nan & Xun, Xiaolei & Cao, Jiguo, 2022. "Dynamical modeling for non-Gaussian data with high-dimensional sparse ordinary differential equations," Computational Statistics & Data Analysis, Elsevier, vol. 173(C).
- Peng Ni & Neng Huang & Fan Nie & Jun Zhang & Zhi Zhang & Bo Wu & Lu Bai & Wende Liu & Chuan-Le Xiao & Feng Luo & Jianxin Wang, 2021. "Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
- Zhaohui Qin & Ben Li & Karen N. Conneely & Hao Wu & Ming Hu & Deepak Ayyala & Yongseok Park & Victor X. Jin & Fangyuan Zhang & Han Zhang & Li Li & Shili Lin, 2016. "Statistical Challenges in Analyzing Methylation and Long-Range Chromosomal Interaction Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 8(2), pages 284-309, October.
- Sun Shuying & Yu Xiaoqing, 2016. "HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher’s exact test," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 15(1), pages 55-67, March.
- Jian Fang & Jianjun Jiang & Sarah M. Leichter & Jie Liu & Mahamaya Biswal & Nelli Khudaverdyan & Xuehua Zhong & Jikui Song, 2022. "Mechanistic basis for maintenance of CHG DNA methylation in plants," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Yinwen Zhang & Hosung Jang & Rui Xiao & Ioanna Kakoulidou & Robert S. Piecyk & Frank Johannes & Robert J. Schmitz, 2021. "Heterochromatin is a quantitative trait associated with spontaneous epiallele formation," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
- Lijun Wang & Xiuling You & Dengfeng Ruan & Rui Shao & Hai-Qiang Dai & Weiliang Shen & Guo-Liang Xu & Wanlu Liu & Weiguo Zou, 2022. "TET enzymes regulate skeletal development through increasing chromatin accessibility of RUNX2 target genes," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Olbricht Gayla R. & Craig Bruce A. & Doerge Rebecca W., 2012. "Incorporating Genomic Annotation into a Hidden Markov Model for DNA Methylation Tiling Array Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(5), pages 1-37, November.
- Jiyuan Hu & Tengfei Li & Zidi Xiu & Hong Zhang, 2015. "MAFsnp: A Multi-Sample Accurate and Flexible SNP Caller Using Next-Generation Sequencing Data," PLOS ONE, Public Library of Science, vol. 10(8), pages 1-15, August.
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