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The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

Author

Listed:
  • Brenda J. Reinhart

    (Harvard Medical School)

  • Frank J. Slack

    (Harvard Medical School
    Yale University)

  • Michael Basson

    (Massachusetts Institute of Technology
    Axys Pharmaceuticals)

  • Amy E. Pasquinelli

    (Harvard Medical School)

  • Jill C. Bettinger

    (Axys Pharmaceuticals
    Ernest Gallo Clinic and Research Center, UCSF)

  • Ann E. Rougvie

    (Cell Biology and Development, University of Minnesota, St Paul)

  • H. Robert Horvitz

    (Massachusetts Institute of Technology)

  • Gary Ruvkun

    (Harvard Medical School)

Abstract

The C. elegans heterochronic gene pathway consists of a cascade of regulatory genes that are temporally controlled to specify the timing of developmental events1. Mutations in heterochronic genes cause temporal transformations in cell fates in which stage-specific events are omitted or reiterated2. Here we show that let-7 is a heterochronic switch gene. Loss of let-7 gene activity causes reiteration of larval cell fates during the adult stage, whereas increased let-7 gene dosage causes precocious expression of adult fates during larval stages. let-7 encodes a temporally regulated 21-nucleotide RNA that is complementary to elements in the 3′ untranslated regions of the heterochronic genes lin-14, lin-28, lin-41, lin-42 and daf-12, indicating that expression of these genes may be directly controlled by let-7. A reporter gene bearing the lin-41 3′ untranslated region is temporally regulated in a let-7-dependent manner. A second regulatory RNA, lin-4, negatively regulates lin-14 and lin-28 through RNA–RNA interactions with their 3′ untranslated regions3,4. We propose that the sequential stage-specific expression of the lin-4 and let-7 regulatory RNAs triggers transitions in the complement of heterochronic regulatory proteins to coordinate developmental timing.

Suggested Citation

  • Brenda J. Reinhart & Frank J. Slack & Michael Basson & Amy E. Pasquinelli & Jill C. Bettinger & Ann E. Rougvie & H. Robert Horvitz & Gary Ruvkun, 2000. "The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans," Nature, Nature, vol. 403(6772), pages 901-906, February.
  • Handle: RePEc:nat:nature:v:403:y:2000:i:6772:d:10.1038_35002607
    DOI: 10.1038/35002607
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    Cited by:

    1. Zhen Shen & You-Hua Zhang & Kyungsook Han & Asoke K. Nandi & Barry Honig & De-Shuang Huang, 2017. "miRNA-Disease Association Prediction with Collaborative Matrix Factorization," Complexity, Hindawi, vol. 2017, pages 1-9, September.
    2. Chikako Ragan & Michael Zuker & Mark A Ragan, 2011. "Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations," PLOS Computational Biology, Public Library of Science, vol. 7(2), pages 1-11, February.
    3. Yonghua Wang & Yan Li & Zhi Ma & Wei Yang & Chunzhi Ai, 2010. "Mechanism of MicroRNA-Target Interaction: Molecular Dynamics Simulations and Thermodynamics Analysis," PLOS Computational Biology, Public Library of Science, vol. 6(7), pages 1-19, July.
    4. Akiko Doi & Gianmarco D. Suarez & Rita Droste & H. Robert Horvitz, 2023. "A DEAD-box helicase drives the partitioning of a pro-differentiation NAB protein into nuclear foci," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    5. Parawee Lekprasert & Michael Mayhew & Uwe Ohler, 2011. "Assessing the Utility of Thermodynamic Features for microRNA Target Prediction under Relaxed Seed and No Conservation Requirements," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-13, June.
    6. Juan Roa & Miguel Ruiz-Cruz & Francisco Ruiz-Pino & Rocio Onieva & Maria J. Vazquez & Maria J. Sanchez-Tapia & Jose M. Ruiz-Rodriguez & Veronica Sobrino & Alexia Barroso & Violeta Heras & Inmaculada V, 2022. "Dicer ablation in Kiss1 neurons impairs puberty and fertility preferentially in female mice," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    7. Seungwon Jung & Seung Hwan Ko & Narae Ahn & Jinsam Lee & Chang-Hwan Park & Jungwook Hwang, 2024. "Role of UPF1-LIN28A interaction during early differentiation of pluripotent stem cells," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    8. Evangelia Lekka & Aleksandra Kokanovic & Simone Mosole & Gianluca Civenni & Sandro Schmidli & Artur Laski & Alice Ghidini & Pavithra Iyer & Christian Berk & Alok Behera & Carlo V. Catapano & Jonathan , 2022. "Pharmacological inhibition of Lin28 promotes ketogenesis and restores lipid homeostasis in models of non-alcoholic fatty liver disease," Nature Communications, Nature, vol. 13(1), pages 1-17, December.

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