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Controllable protein phase separation and modular recruitment to form responsive membraneless organelles

Author

Listed:
  • Benjamin S. Schuster

    (University of Pennsylvania)

  • Ellen H. Reed

    (University of Pennsylvania)

  • Ranganath Parthasarathy

    (University of Pennsylvania)

  • Craig N. Jahnke

    (University of Pennsylvania)

  • Reese M. Caldwell

    (University of Pennsylvania)

  • Jessica G. Bermudez

    (University of Pennsylvania)

  • Holly Ramage

    (University of Pennsylvania)

  • Matthew C. Good

    (University of Pennsylvania
    University of Pennsylvania)

  • Daniel A. Hammer

    (University of Pennsylvania
    University of Pennsylvania)

Abstract

Many intrinsically disordered proteins self-assemble into liquid droplets that function as membraneless organelles. Because of their biological importance and ability to colocalize molecules at high concentrations, these protein compartments represent a compelling target for bio-inspired materials engineering. Here we manipulated the intrinsically disordered, arginine/glycine-rich RGG domain from the P granule protein LAF-1 to generate synthetic membraneless organelles with controllable phase separation and cargo recruitment. First, we demonstrate enzymatically triggered droplet assembly and disassembly, whereby miscibility and RGG domain valency are tuned by protease activity. Second, we control droplet composition by selectively recruiting cargo molecules via protein interaction motifs. We then demonstrate protease-triggered controlled release of cargo. Droplet assembly and cargo recruitment are robust, occurring in cytoplasmic extracts and in living mammalian cells. This versatile system, which generates dynamic membraneless organelles with programmable phase behavior and composition, has important applications for compartmentalizing collections of proteins in engineered cells and protocells.

Suggested Citation

  • Benjamin S. Schuster & Ellen H. Reed & Ranganath Parthasarathy & Craig N. Jahnke & Reese M. Caldwell & Jessica G. Bermudez & Holly Ramage & Matthew C. Good & Daniel A. Hammer, 2018. "Controllable protein phase separation and modular recruitment to form responsive membraneless organelles," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-018-05403-1
    DOI: 10.1038/s41467-018-05403-1
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    Cited by:

    1. Marcos Gil-Garcia & Ana I. Benítez-Mateos & Marcell Papp & Florence Stoffel & Chiara Morelli & Karl Normak & Katarzyna Makasewicz & Lenka Faltova & Francesca Paradisi & Paolo Arosio, 2024. "Local environment in biomolecular condensates modulates enzymatic activity across length scales," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    2. Vivian Yeong & Jou-wen Wang & Justin M. Horn & Allie C. Obermeyer, 2022. "Intracellular phase separation of globular proteins facilitated by short cationic peptides," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    3. Ellen H. Brumbaugh-Reed & Yang Gao & Kazuhiro Aoki & Jared E. Toettcher, 2024. "Rapid and reversible dissolution of biomolecular condensates using light-controlled recruitment of a solubility tag," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    4. Yuri Hong & Saeed Najafi & Thomas Casey & Joan-Emma Shea & Song-I Han & Dong Soo Hwang, 2022. "Hydrophobicity of arginine leads to reentrant liquid-liquid phase separation behaviors of arginine-rich proteins," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    5. Yohan Lee & Sujin Park & Feng Yuan & Carl C. Hayden & Liping Wang & Eileen M. Lafer & Siyoung Q. Choi & Jeanne C. Stachowiak, 2023. "Transmembrane coupling of liquid-like protein condensates," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    6. Fernando Muzzopappa & Johan Hummert & Michela Anfossi & Stanimir Asenov Tashev & Dirk-Peter Herten & Fabian Erdel, 2022. "Detecting and quantifying liquid–liquid phase separation in living cells by model-free calibrated half-bleaching," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    7. Tomoya Maruyama & Jing Gong & Masahiro Takinoue, 2024. "Temporally controlled multistep division of DNA droplets for dynamic artificial cells," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    8. Hao-Yu Chuang & Ruei-Yu He & Yung-An Huang & Wan-Ting Hsu & Ya-Jen Cheng & Zheng-Rong Guo & Niaz Wali & Ing-Shouh Hwang & Jiun-Jie Shie & Joseph Jen-Tse Huang, 2024. "Engineered droplet-forming peptide as photocontrollable phase modulator for fused in sarcoma protein," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    9. Wenwen Yu & Ke Jin & Dandan Wang & Nankai Wang & Yangyang Li & Yanfeng Liu & Jianghua Li & Guocheng Du & Xueqin Lv & Jian Chen & Rodrigo Ledesma-Amaro & Long Liu, 2024. "De novo engineering of programmable and multi-functional biomolecular condensates for controlled biosynthesis," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    10. Jaimie Marie Stewart & Shiyi Li & Anli A. Tang & Melissa Ann Klocke & Martin Vincent Gobry & Giacomo Fabrini & Lorenzo Michele & Paul W. K. Rothemund & Elisa Franco, 2024. "Modular RNA motifs for orthogonal phase separated compartments," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    11. Manjia Li & Byung Min Park & Xin Dai & Yingjie Xu & Jinqing Huang & Fei Sun, 2022. "Controlling synthetic membraneless organelles by a red-light-dependent singlet oxygen-generating protein," Nature Communications, Nature, vol. 13(1), pages 1-13, December.

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