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Multimodal histopathologic models stratify hormone receptor-positive early breast cancer

Author

Listed:
  • Kevin M. Boehm

    (Memorial Sloan Kettering Cancer Center
    Memorial Sloan Kettering Cancer Center)

  • Omar S. M. El Nahhas

    (Technical University Dresden
    StratifAI GmbH)

  • Antonio Marra

    (Memorial Sloan Kettering Cancer Center
    European Institute of Oncology IRCCS)

  • Michele Waters

    (Memorial Sloan Kettering Cancer Center)

  • Justin Jee

    (Memorial Sloan Kettering Cancer Center
    Memorial Sloan Kettering Cancer Center)

  • Lior Braunstein

    (Memorial Sloan Kettering Cancer Center)

  • Nikolaus Schultz

    (Memorial Sloan Kettering Cancer Center
    Memorial Sloan Kettering Cancer Center
    Memorial Sloan Kettering Cancer Center)

  • Pier Selenica

    (Memorial Sloan Kettering Cancer Center)

  • Hannah Y. Wen

    (Memorial Sloan Kettering Cancer Center)

  • Britta Weigelt

    (Memorial Sloan Kettering Cancer Center)

  • Evan D. Paul

    (Comenius University Science Park
    Inc.)

  • Pavol Cekan

    (Comenius University Science Park
    Inc.)

  • Ramona Erber

    (Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN))

  • Chiara M. L. Loeffler

    (Technical University Dresden)

  • Elena Guerini-Rocco

    (European Institute of Oncology IRCCS
    University of Milano)

  • Nicola Fusco

    (European Institute of Oncology IRCCS
    University of Milano)

  • Chiara Frascarelli

    (European Institute of Oncology IRCCS
    University of Milano)

  • Eltjona Mane

    (European Institute of Oncology IRCCS)

  • Elisabetta Munzone

    (European Institute of Oncology IRCCS)

  • Silvia Dellapasqua

    (European Institute of Oncology IRCCS)

  • Paola Zagami

    (European Institute of Oncology IRCCS
    University of Milano)

  • Giuseppe Curigliano

    (European Institute of Oncology IRCCS
    University of Milano)

  • Pedram Razavi

    (Memorial Sloan Kettering Cancer Center)

  • Jorge S. Reis-Filho

    (Memorial Sloan Kettering Cancer Center
    1 MedImmune Way)

  • Fresia Pareja

    (Memorial Sloan Kettering Cancer Center)

  • Sarat Chandarlapaty

    (Memorial Sloan Kettering Cancer Center
    Memorial Sloan Kettering Cancer Center)

  • Sohrab P. Shah

    (Memorial Sloan Kettering Cancer Center)

  • Jakob Nikolas Kather

    (Technical University Dresden
    University Hospital Heidelberg)

Abstract

The Oncotype DX® Recurrence Score (RS) is an assay for hormone receptor-positive early breast cancer with extensively validated predictive and prognostic value. However, its cost and lag time have limited global adoption, and previous attempts to estimate it using clinicopathologic variables have had limited success. To address this, we assembled 6172 cases across three institutions and developed Orpheus, a multimodal deep learning tool to infer the RS from H&E whole-slide images. Our model identifies TAILORx high-risk cases (RS > 25) with an area under the curve (AUC) of 0.89, compared to a leading clinicopathologic nomogram with 0.73. Furthermore, in patients with RS ≤ 25, Orpheus ascertains risk of metastatic recurrence more accurately than the RS itself (0.75 vs 0.49 mean time-dependent AUC). These findings have the potential to guide adjuvant therapy for high-risk cases and tailor surveillance for patients at elevated metastatic recurrence risk.

Suggested Citation

  • Kevin M. Boehm & Omar S. M. El Nahhas & Antonio Marra & Michele Waters & Justin Jee & Lior Braunstein & Nikolaus Schultz & Pier Selenica & Hannah Y. Wen & Britta Weigelt & Evan D. Paul & Pavol Cekan &, 2025. "Multimodal histopathologic models stratify hormone receptor-positive early breast cancer," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-57283-x
    DOI: 10.1038/s41467-025-57283-x
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    References listed on IDEAS

    as
    1. Evan D. Paul & Barbora Huraiová & Natália Valková & Natalia Matyasovska & Daniela Gábrišová & Soňa Gubová & Helena Ignačáková & Tomáš Ondris & Michal Gala & Liliane Barroso & Silvia Bendíková & Jarmil, 2025. "The spatially informed mFISHseq assay resolves biomarker discordance and predicts treatment response in breast cancer," Nature Communications, Nature, vol. 16(1), pages 1-22, December.
    2. Stephen-John Sammut & Mireia Crispin-Ortuzar & Suet-Feung Chin & Elena Provenzano & Helen A. Bardwell & Wenxin Ma & Wei Cope & Ali Dariush & Sarah-Jane Dawson & Jean E. Abraham & Janet Dunn & Louise H, 2022. "Multi-omic machine learning predictor of breast cancer therapy response," Nature, Nature, vol. 601(7894), pages 623-629, January.
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