Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia
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DOI: 10.1038/s41467-024-53566-x
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- Himel Mallick & Ali Rahnavard & Lauren J McIver & Siyuan Ma & Yancong Zhang & Long H Nguyen & Timothy L Tickle & George Weingart & Boyu Ren & Emma H Schwager & Suvo Chatterjee & Kelsey N Thompson & Je, 2021. "Multivariable association discovery in population-scale meta-omics studies," PLOS Computational Biology, Public Library of Science, vol. 17(11), pages 1-27, November.
- Eran Mick & Jack Kamm & Angela Oliveira Pisco & Kalani Ratnasiri & Jennifer M. Babik & Gloria Castañeda & Joseph L. DeRisi & Angela M. Detweiler & Samantha L. Hao & Kirsten N. Kangelaris & G. Renuka K, 2020. "Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses," Nature Communications, Nature, vol. 11(1), pages 1-7, December.
- Aartik Sarma & Stephanie A. Christenson & Ashley Byrne & Eran Mick & Angela Oliveira Pisco & Catherine DeVoe & Thomas Deiss & Rajani Ghale & Beth Shoshana Zha & Alexandra Tsitsiklis & Alejandra Jaureg, 2021. "Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Verónica Lloréns-Rico & Ann C. Gregory & Johan Van Weyenbergh & Sander Jansen & Tina Van Buyten & Junbin Qian & Marcos Braz & Soraya Maria Menezes & Pierre Van Mol & Lore Vanderbeke & Christophe Dooms, 2021. "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
- Drishti Kaul & Raveen Rathnasinghe & Marcela Ferres & Gene S. Tan & Aldo Barrera & Brett E. Pickett & Barbara A. Methe & Suman R. Das & Isolda Budnik & Rebecca A. Halpin & David Wentworth & Mirco Schm, 2020. "Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection," Nature Communications, Nature, vol. 11(1), pages 1-1, December.
- Georgios D. Kitsios & Khaled Sayed & Adam Fitch & Haopu Yang & Noel Britton & Faraaz Shah & William Bain & John W. Evankovich & Shulin Qin & Xiaohong Wang & Kelvin Li & Asha Patel & Yingze Zhang & Jos, 2024. "Longitudinal multicompartment characterization of host-microbiota interactions in patients with acute respiratory failure," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
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