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Immune landscape of oncohistone-mutant gliomas reveals diverse myeloid populations and tumor-promoting function

Author

Listed:
  • Augusto Faria Andrade

    (McGill University
    The Research Institute of the McGill University Health Centre)

  • Alva Annett

    (McGill University)

  • Elham Karimi

    (McGill University)

  • Danai Georgia Topouza

    (McGill University)

  • Morteza Rezanejad

    (University of Toronto)

  • Yitong Liu

    (McGill University)

  • Michael McNicholas

    (University of Cambridge
    University of Cambridge)

  • Eduardo G. Gonzalez Santiago

    (Yale School of Medicine)

  • Dhana Llivichuzhca-Loja

    (Yale School of Medicine)

  • Arne Gehlhaar

    (University of Bonn)

  • Selin Jessa

    (McGill University
    Jewish General Hospital)

  • Antonella Cola

    (University of Cambridge
    University of Cambridge)

  • Bhavyaa Chandarana

    (McGill University)

  • Caterina Russo

    (The Research Institute of the McGill University Health Centre
    McGill University)

  • Damien Faury

    (The Research Institute of the McGill University Health Centre
    McGill University)

  • Geoffroy Danieau

    (The Research Institute of the McGill University Health Centre
    McGill University Health Centre)

  • Evan Puligandla

    (McGill University)

  • Yuhong Wei

    (McGill University)

  • Michele Zeinieh

    (McGill University)

  • Qing Wu

    (The Research Institute of the McGill University Health Centre
    McGill University)

  • Steven Hebert

    (McGill University
    Jewish General Hospital)

  • Nikoleta Juretic

    (The Research Institute of the McGill University Health Centre
    McGill University)

  • Emily M. Nakada

    (The Research Institute of the McGill University Health Centre
    McGill University)

  • Brian Krug

    (McGill University)

  • Valerie Larouche

    (Centre mère-enfant Soleil du CHU de Québec-Université Laval)

  • Alexander G. Weil

    (Sainte-Justine Research Centre
    Université de Montréal
    University of Montreal)

  • Roy W. R. Dudley

    (McGill University)

  • Jason Karamchandani

    (McGill University)

  • Sameer Agnihotri

    (University of Pittsburgh School of Medicine)

  • Daniela F. Quail

    (McGill University
    McGill University
    McGill University)

  • Benjamin Ellezam

    (Université de Montréal)

  • Liza Konnikova

    (Yale School of Medicine
    Yale School of Medicine
    Yale School of Medicine)

  • Logan A. Walsh

    (McGill University
    McGill University)

  • Manav Pathania

    (University of Cambridge
    University of Cambridge)

  • Claudia L. Kleinman

    (McGill University
    Jewish General Hospital)

  • Nada Jabado

    (McGill University
    The Research Institute of the McGill University Health Centre
    McGill University
    McGill University)

Abstract

Histone H3-mutant gliomas are deadly brain tumors characterized by a dysregulated epigenome and stalled differentiation. In contrast to the extensive datasets available on tumor cells, limited information exists on their tumor microenvironment (TME), particularly the immune infiltrate. Here, we characterize the immune TME of H3.3K27M and G34R/V-mutant gliomas, and multiple H3.3K27M mouse models, using transcriptomic, proteomic and spatial single-cell approaches. Resolution of immune lineages indicates high infiltration of H3-mutant gliomas with diverse myeloid populations, high-level expression of immune checkpoint markers, and scarce lymphoid cells, findings uniformly reproduced in all H3.3K27M mouse models tested. We show these myeloid populations communicate with H3-mutant cells, mediating immunosuppression and sustaining tumor formation and maintenance. Dual inhibition of myeloid cells and immune checkpoint pathways show significant therapeutic benefits in pre-clinical syngeneic mouse models. Our findings provide a valuable characterization of the TME of oncohistone-mutant gliomas, and insight into the means for modulating the myeloid infiltrate for the benefit of patients.

Suggested Citation

  • Augusto Faria Andrade & Alva Annett & Elham Karimi & Danai Georgia Topouza & Morteza Rezanejad & Yitong Liu & Michael McNicholas & Eduardo G. Gonzalez Santiago & Dhana Llivichuzhca-Loja & Arne Gehlhaa, 2024. "Immune landscape of oncohistone-mutant gliomas reveals diverse myeloid populations and tumor-promoting function," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-52096-w
    DOI: 10.1038/s41467-024-52096-w
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    References listed on IDEAS

    as
    1. Lieke Michielsen & Marcel J. T. Reinders & Ahmed Mahfouz, 2021. "Hierarchical progressive learning of cell identities in single-cell data," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    2. Peter A. Szabo & Hanna Mendes Levitin & Michelle Miron & Mark E. Snyder & Takashi Senda & Jinzhou Yuan & Yim Ling Cheng & Erin C. Bush & Pranay Dogra & Puspa Thapa & Donna L. Farber & Peter A. Sims, 2019. "Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
    3. Chenwei Li & Baolin Liu & Boxi Kang & Zedao Liu & Yedan Liu & Changya Chen & Xianwen Ren & Zemin Zhang, 2020. "SciBet as a portable and fast single cell type identifier," Nature Communications, Nature, vol. 11(1), pages 1-8, December.
    4. Elham Karimi & Miranda W. Yu & Sarah M. Maritan & Lucas J. M. Perus & Morteza Rezanejad & Mark Sorin & Matthew Dankner & Parvaneh Fallah & Samuel Doré & Dongmei Zuo & Benoit Fiset & Daan J. Kloosterma, 2023. "Single-cell spatial immune landscapes of primary and metastatic brain tumours," Nature, Nature, vol. 614(7948), pages 555-563, February.
    5. Jeremy Schwartzentruber & Andrey Korshunov & Xiao-Yang Liu & David T. W. Jones & Elke Pfaff & Karine Jacob & Dominik Sturm & Adam M. Fontebasso & Dong-Anh Khuong Quang & Martje Tönjes & Volker Hovesta, 2012. "Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma," Nature, Nature, vol. 482(7384), pages 226-231, February.
    6. Ashot S. Harutyunyan & Brian Krug & Haifen Chen & Simon Papillon-Cavanagh & Michele Zeinieh & Nicolas De Jay & Shriya Deshmukh & Carol C. L. Chen & Jad Belle & Leonie G. Mikael & Dylan M. Marchione & , 2019. "H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    7. David A. Barbie & Pablo Tamayo & Jesse S. Boehm & So Young Kim & Susan E. Moody & Ian F. Dunn & Anna C. Schinzel & Peter Sandy & Etienne Meylan & Claudia Scholl & Stefan Fröhling & Edmond M. Chan & Ma, 2009. "Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1," Nature, Nature, vol. 462(7269), pages 108-112, November.
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