Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma
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DOI: 10.1038/s41467-023-38886-8
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- Koen Van den Berge & Hector Roux de Bézieux & Kelly Street & Wouter Saelens & Robrecht Cannoodt & Yvan Saeys & Sandrine Dudoit & Lieven Clement, 2020. "Trajectory-based differential expression analysis for single-cell sequencing data," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
- Peter A. Szabo & Hanna Mendes Levitin & Michelle Miron & Mark E. Snyder & Takashi Senda & Jinzhou Yuan & Yim Ling Cheng & Erin C. Bush & Pranay Dogra & Puspa Thapa & Donna L. Farber & Peter A. Sims, 2019. "Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
- Tsing-Lee Tang-Huau & Paul Gueguen & Christel Goudot & Mélanie Durand & Mylène Bohec & Sylvain Baulande & Benoit Pasquier & Sebastian Amigorena & Elodie Segura, 2018. "Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
- Lars Custers & Eleonora Khabirova & Tim H. H. Coorens & Thomas R. W. Oliver & Camilla Calandrini & Matthew D. Young & Felipe A. Vieira Braga & Peter Ellis & Lira Mamanova & Heidi Segers & Arie Maat & , 2021. "Somatic mutations and single-cell transcriptomes reveal the root of malignant rhabdoid tumours," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
- Dominik Laubscher & Berkley E. Gryder & Benjamin D. Sunkel & Thorkell Andresson & Marco Wachtel & Sudipto Das & Bernd Roschitzki & Witold Wolski & Xiaoli S. Wu & Hsien-Chao Chou & Young K. Song & Chao, 2021. "BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
- Suoqin Jin & Christian F. Guerrero-Juarez & Lihua Zhang & Ivan Chang & Raul Ramos & Chen-Hsiang Kuan & Peggy Myung & Maksim V. Plikus & Qing Nie, 2021. "Inference and analysis of cell-cell communication using CellChat," Nature Communications, Nature, vol. 12(1), pages 1-20, December.
- Itay Tirosh & Andrew S. Venteicher & Christine Hebert & Leah E. Escalante & Anoop P. Patel & Keren Yizhak & Jonathan M. Fisher & Christopher Rodman & Christopher Mount & Mariella G. Filbin & Cyril Nef, 2016. "Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma," Nature, Nature, vol. 539(7628), pages 309-313, November.
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