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Serial X-ray liquidography: multi-dimensional assay framework for exploring biomolecular structural dynamics with microgram quantities

Author

Listed:
  • Seong Ok Kim

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • So Ri Yun

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Hyosub Lee

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Junbeom Jo

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Doo-Sik Ahn

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Doyeong Kim

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Irina Kosheleva

    (The University of Chicago, 9700 South Cass Avenue)

  • Robert Henning

    (The University of Chicago, 9700 South Cass Avenue)

  • Jungmin Kim

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Changin Kim

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Seyoung You

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Hanui Kim

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Sang Jin Lee

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

  • Hyotcherl Ihee

    (Institute for Basic Science (IBS)
    Korea Advanced Institute of Science and Technology (KAIST))

Abstract

Understanding protein structure and kinetics under physiological conditions is crucial for elucidating complex biological processes. While time-resolved (TR) techniques have advanced to track molecular actions, their practical application in biological reactions is often confined to reversible photoreactions within limited experimental parameters due to inefficient sample utilization and inflexibility of experimental setups. Here, we introduce serial X-ray liquidography (SXL), a technique that combines time-resolved X-ray liquidography with a fixed target of serially arranged microchambers. SXL breaks through the previously mentioned barriers, enabling microgram-scale TR studies of both irreversible and reversible reactions of even a non-photoactive protein. We demonstrate its versatility in studying a wide range of biological reactions, highlighting its potential as a flexible and multi-dimensional assay framework for kinetic and structural characterization. Leveraging X-ray free-electron lasers and micro-focused X-ray pulses promises further enhancements in both temporal resolution and minimizing sample quantity. SXL offers unprecedented insights into the structural and kinetic landscapes of molecular actions, paving the way for a deeper understanding of complex biological processes.

Suggested Citation

  • Seong Ok Kim & So Ri Yun & Hyosub Lee & Junbeom Jo & Doo-Sik Ahn & Doyeong Kim & Irina Kosheleva & Robert Henning & Jungmin Kim & Changin Kim & Seyoung You & Hanui Kim & Sang Jin Lee & Hyotcherl Ihee, 2024. "Serial X-ray liquidography: multi-dimensional assay framework for exploring biomolecular structural dynamics with microgram quantities," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-50696-0
    DOI: 10.1038/s41467-024-50696-0
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    References listed on IDEAS

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    1. Di Wu & Qi Hu & Zhen Yan & Wen Chen & Chuangye Yan & Xi Huang & Jing Zhang & Panyu Yang & Haiteng Deng & Jiawei Wang & XingWang Deng & Yigong Shi, 2012. "Structural basis of ultraviolet-B perception by UVR8," Nature, Nature, vol. 484(7393), pages 214-219, April.
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