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A human-machine interface for automatic exploration of chemical reaction networks

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  • Miguel Steiner

    (Department of Chemistry and Applied Biosciences
    NCCR Catalysis)

  • Markus Reiher

    (Department of Chemistry and Applied Biosciences
    NCCR Catalysis)

Abstract

Autonomous reaction network exploration algorithms offer a systematic approach to explore mechanisms of complex chemical processes. However, the resulting reaction networks are so vast that an exploration of all potentially accessible intermediates is computationally too demanding. This renders brute-force explorations unfeasible, while explorations with completely pre-defined intermediates or hard-wired chemical constraints, such as element-specific coordination numbers, are not flexible enough for complex chemical systems. Here, we introduce a STEERING WHEEL to guide an otherwise unbiased automated exploration. The STEERING WHEEL algorithm is intuitive, generally applicable, and enables one to focus on specific regions of an emerging network. It also allows for guiding automated data generation in the context of mechanism exploration, catalyst design, and other chemical optimization challenges. The algorithm is demonstrated for reaction mechanism elucidation of transition metal catalysts. We highlight how to explore catalytic cycles in a systematic and reproducible way. The exploration objectives are fully adjustable, allowing one to harness the STEERING WHEEL for both structure-specific (accurate) calculations as well as for broad high-throughput screening of possible reaction intermediates.

Suggested Citation

  • Miguel Steiner & Markus Reiher, 2024. "A human-machine interface for automatic exploration of chemical reaction networks," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47997-9
    DOI: 10.1038/s41467-024-47997-9
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    References listed on IDEAS

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    1. Jörg Behler & Gábor Csányi, 2021. "Machine learning potentials for extended systems: a perspective," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 94(7), pages 1-11, July.
    2. Zachary W. Ulissi & Andrew J. Medford & Thomas Bligaard & Jens K. Nørskov, 2017. "To address surface reaction network complexity using scaling relations machine learning and DFT calculations," Nature Communications, Nature, vol. 8(1), pages 1-7, April.
    3. So Takamoto & Chikashi Shinagawa & Daisuke Motoki & Kosuke Nakago & Wenwen Li & Iori Kurata & Taku Watanabe & Yoshihiro Yayama & Hiroki Iriguchi & Yusuke Asano & Tasuku Onodera & Takafumi Ishii & Taka, 2022. "Towards universal neural network potential for material discovery applicable to arbitrary combination of 45 elements," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    4. Qiyuan Zhao & Yinan Xu & Jeffrey Greeley & Brett M. Savoie, 2022. "Deep reaction network exploration at a heterogeneous catalytic interface," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
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