Nonlinear DNA methylation trajectories in aging male mice
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DOI: 10.1038/s41467-024-47316-2
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- Michael Lawrence & Wolfgang Huber & Hervé Pagès & Patrick Aboyoun & Marc Carlson & Robert Gentleman & Martin T Morgan & Vincent J Carey, 2013. "Software for Computing and Annotating Genomic Ranges," PLOS Computational Biology, Public Library of Science, vol. 9(8), pages 1-10, August.
- David R. Bentley & Shankar Balasubramanian & Harold P. Swerdlow & Geoffrey P. Smith & John Milton & Clive G. Brown & Kevin P. Hall & Dirk J. Evers & Colin L. Barnes & Helen R. Bignell & Jonathan M. Bo, 2008. "Accurate whole human genome sequencing using reversible terminator chemistry," Nature, Nature, vol. 456(7218), pages 53-59, November.
- Thomas Montavon & Nicholas Shukeir & Galina Erikson & Bettina Engist & Megumi Onishi-Seebacher & Devon Ryan & Yaarub Musa & Gerhard Mittler & Alexandra Graff Meyer & Christel Genoud & Thomas Jenuwein, 2021. "Complete loss of H3K9 methylation dissolves mouse heterochromatin organization," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
- Laetitia Mazelin & Agnès Bernet & Christelle Bonod-Bidaud & Laurent Pays & Ségolène Arnaud & Christian Gespach & Dale E Bredesen & Jean-Yves Scoazec & Patrick Mehlen, 2004. "Netrin-1 controls colorectal tumorigenesis by regulating apoptosis," Nature, Nature, vol. 431(7004), pages 80-84, September.
- Peer Aramillo Irizar & Sascha Schäuble & Daniela Esser & Marco Groth & Christiane Frahm & Steffen Priebe & Mario Baumgart & Nils Hartmann & Shiva Marthandan & Uwe Menzel & Jule Müller & Silvio Schmidt, 2018. "Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly," Nature Communications, Nature, vol. 9(1), pages 1-11, December.
- Hervé Tricoire & Michael Rera, 2015. "A New, Discontinuous 2 Phases of Aging Model: Lessons from Drosophila melanogaster," PLOS ONE, Public Library of Science, vol. 10(11), pages 1-14, November.
- Xuran Wang & Jihwan Park & Katalin Susztak & Nancy R. Zhang & Mingyao Li, 2019. "Bulk tissue cell type deconvolution with multi-subject single-cell expression reference," Nature Communications, Nature, vol. 10(1), pages 1-9, December.
- Huan Lian & Jin Wei & Ru Zang & Wen Ye & Qing Yang & Xia-Nan Zhang & Yun-Da Chen & Yu-Zhi Fu & Ming-Ming Hu & Cao-Qi Lei & Wei-Wei Luo & Shu Li & Hong-Bing Shu, 2018. "ZCCHC3 is a co-sensor of cGAS for dsDNA recognition in innate immune response," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
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