Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-024-47304-6
Download full text from publisher
References listed on IDEAS
- Gergely Palla & Imre Derényi & Illés Farkas & Tamás Vicsek, 2005. "Uncovering the overlapping community structure of complex networks in nature and society," Nature, Nature, vol. 435(7043), pages 814-818, June.
- Robert Tibshirani & Guenther Walther & Trevor Hastie, 2001. "Estimating the number of clusters in a data set via the gap statistic," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 63(2), pages 411-423.
- Alief Moulana & Thomas Dupic & Angela M. Phillips & Jeffrey Chang & Serafina Nieves & Anne A. Roffler & Allison J. Greaney & Tyler N. Starr & Jesse D. Bloom & Michael M. Desai, 2022. "Compensatory epistasis maintains ACE2 affinity in SARS-CoV-2 Omicron BA.1," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Delphine Planas & David Veyer & Artem Baidaliuk & Isabelle Staropoli & Florence Guivel-Benhassine & Maaran Michael Rajah & Cyril Planchais & Françoise Porrot & Nicolas Robillard & Julien Puech & Matth, 2021. "Reduced sensitivity of SARS-CoV-2 variant Delta to antibody neutralization," Nature, Nature, vol. 596(7871), pages 276-280, August.
- Yunxi Liu & Joshua Kearney & Medhat Mahmoud & Bryce Kille & Fritz J. Sedlazeck & Todd J. Treangen, 2022. "Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Thiemo Fetzer & Samuel Marden, 2017.
"Take What You Can: Property Rights, Contestability and Conflict,"
Economic Journal, Royal Economic Society, vol. 0(601), pages 757-783, May.
- Thiemo, Fetzer & Marden, Samuel, 2016. "Take what you can: property rights, contestability and conflict," CAGE Online Working Paper Series 285, Competitive Advantage in the Global Economy (CAGE).
- Thiemo Fetzer & Samuel Marden, 2016. "Take what you can: property rights, contestability and conflict," HiCN Working Papers 214, Households in Conflict Network.
- Thiemo Fetzer & Samuel Marden, 2016. "Take What You Can: Property Rights, Contestability and Conflict," SERC Discussion Papers 0194, Centre for Economic Performance, LSE.
- Thiemo Fetzer & Samuel Marden, 2016. "Take what you can: property rights, contestability and conflict," Working Paper Series 09216, Department of Economics, University of Sussex Business School.
- Fetzer, Thiemo & Marden, Samuel, 2016. "Take what you can: property rights, contestability andconflict," LSE Research Online Documents on Economics 66534, London School of Economics and Political Science, LSE Library.
- Daniel Agness & Travis Baseler & Sylvain Chassang & Pascaline Dupas & Erik Snowberg, 2022.
"Valuing the Time of the Self-Employed,"
CESifo Working Paper Series
9567, CESifo.
- Daniel Agness & Travis Baseler & Sylvain Chassang & Pascaline Dupas & Erik Snowberg, 2023. "Valuing the Time of the Self-Employed," Working Papers 310, Princeton University, Department of Economics, Center for Economic Policy Studies..
- Daniel J. Agness & Travis Baseler & Sylvain Chassang & Pascaline Dupas & Erik Snowberg, 2022. "Valuing the Time of the Self-Employed," NBER Working Papers 29752, National Bureau of Economic Research, Inc.
- Agness, Daniel & Baseler, Travis & Chassang, Sylvain & Dupas, Pascaline & Snowberg, Erik, 2022. "Valuing the Time of the Self-Employed," CEPR Discussion Papers 17017, C.E.P.R. Discussion Papers.
- Daniel Agness & Travis Baseler & Sylvain Chassang & Pascaline Dupas & Erik Snowberg, 2022. "Valuing the Time of the Self-Employed," Working Papers 2022-2, Princeton University. Economics Department..
- Orietta Nicolis & Jean Paul Maidana & Fabian Contreras & Danilo Leal, 2024. "Analyzing the Impact of COVID-19 on Economic Sustainability: A Clustering Approach," Sustainability, MDPI, vol. 16(4), pages 1-30, February.
- Byung Uk Lee, 2021. "Why Does the SARS-CoV-2 Delta VOC Spread So Rapidly? Universal Conditions for the Rapid Spread of Respiratory Viruses, Minimum Viral Loads for Viral Aerosol Generation, Effects of Vaccination on Viral," IJERPH, MDPI, vol. 18(18), pages 1-6, September.
- Jorge Peña & Yannick Rochat, 2012. "Bipartite Graphs as Models of Population Structures in Evolutionary Multiplayer Games," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-13, September.
- Li, Pai-Ling & Chiou, Jeng-Min, 2011. "Identifying cluster number for subspace projected functional data clustering," Computational Statistics & Data Analysis, Elsevier, vol. 55(6), pages 2090-2103, June.
- Yaeji Lim & Hee-Seok Oh & Ying Kuen Cheung, 2019. "Multiscale Clustering for Functional Data," Journal of Classification, Springer;The Classification Society, vol. 36(2), pages 368-391, July.
- Forzani, Liliana & Gieco, Antonella & Tolmasky, Carlos, 2017. "Likelihood ratio test for partial sphericity in high and ultra-high dimensions," Journal of Multivariate Analysis, Elsevier, vol. 159(C), pages 18-38.
- Yujia Li & Xiangrui Zeng & Chien‐Wei Lin & George C. Tseng, 2022. "Simultaneous estimation of cluster number and feature sparsity in high‐dimensional cluster analysis," Biometrics, The International Biometric Society, vol. 78(2), pages 574-585, June.
- Haogao Gu & Ahmed Abdul Quadeer & Pavithra Krishnan & Daisy Y. M. Ng & Lydia D. J. Chang & Gigi Y. Z. Liu & Samuel M. S. Cheng & Tommy T. Y. Lam & Malik Peiris & Matthew R. McKay & Leo L. M. Poon, 2023. "Within-host genetic diversity of SARS-CoV-2 lineages in unvaccinated and vaccinated individuals," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Vojtech Blazek & Michal Petruzela & Tomas Vantuch & Zdenek Slanina & Stanislav Mišák & Wojciech Walendziuk, 2020. "The Estimation of the Influence of Household Appliances on the Power Quality in a Microgrid System," Energies, MDPI, vol. 13(17), pages 1-21, August.
- Shang, Jiaxing & Liu, Lianchen & Li, Xin & Xie, Feng & Wu, Cheng, 2016. "Targeted revision: A learning-based approach for incremental community detection in dynamic networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 443(C), pages 70-85.
- Haisheng Yu & Banghui Liu & Yudi Zhang & Xijie Gao & Qian Wang & Haitao Xiang & Xiaofang Peng & Caixia Xie & Yaping Wang & Peiyu Hu & Jingrong Shi & Quan Shi & Pingqian Zheng & Chengqian Feng & Guofan, 2023. "Somatically hypermutated antibodies isolated from SARS-CoV-2 Delta infected patients cross-neutralize heterologous variants," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Ying Song & Zhiwen Zheng & Yunmei Shi & Bo Wang, 2023. "GLOD: The Local Greedy Expansion Method for Overlapping Community Detection in Dynamic Provenance Networks," Mathematics, MDPI, vol. 11(15), pages 1-16, July.
- Caruso, Germán & Scartascini, Carlos & Tommasi, Mariano, 2015.
"Are we all playing the same game? The economic effects of constitutions depend on the degree of institutionalization,"
European Journal of Political Economy, Elsevier, vol. 38(C), pages 212-228.
- German Caruso & Carlos Scartascini & Mariano Tommasi, 2013. "Are We All Playing the Same Game? The Economic Effects of Constitutions Depend on the Degree of Institutionalization," Research Department Publications IDB-WP-237, Inter-American Development Bank, Research Department.
- Tommasi, Mariano & Scartascini, Carlos & Caruso, Germán, 2013. "Are We All Playing the Same Game?: The Economic Effects of Constitutions Depend on the Degree of Institutionalization," IDB Publications (Working Papers) 4612, Inter-American Development Bank.
- Zhang, Zhiwei & Wang, Zhenyu, 2015. "Mining overlapping and hierarchical communities in complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 421(C), pages 25-33.
- Masa Tsuchiya & Vincent Piras & Alessandro Giuliani & Masaru Tomita & Kumar Selvarajoo, 2010. "Collective Dynamics of Specific Gene Ensembles Crucial for Neutrophil Differentiation: The Existence of Genome Vehicles Revealed," PLOS ONE, Public Library of Science, vol. 5(8), pages 1-10, August.
- Mehmet Çağlar & Cem Gürler, 2022. "Sustainable Development Goals: A cluster analysis of worldwide countries," Environment, Development and Sustainability: A Multidisciplinary Approach to the Theory and Practice of Sustainable Development, Springer, vol. 24(6), pages 8593-8624, June.
- Wu, Zhihao & Lin, Youfang & Wan, Huaiyu & Tian, Shengfeng & Hu, Keyun, 2012. "Efficient overlapping community detection in huge real-world networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(7), pages 2475-2490.
- Nie, Yanyi & Li, Wenyao & Pan, Liming & Lin, Tao & Wang, Wei, 2022. "Markovian approach to tackle competing pathogens in simplicial complex," Applied Mathematics and Computation, Elsevier, vol. 417(C).
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47304-6. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.